BtaEX0003565 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011337 | ANKRD33B
Description
Bos taurus ankyrin repeat domain 33B (ANKRD33B), mRNA. [Source:RefSeq mRNA;Acc:NM_001205847]
Coordinates
chr20:62736496-62820226:-
Coord C1 exon
chr20:62819861-62820226
Coord A exon
chr20:62758915-62759044
Coord C2 exon
chr20:62736496-62736636
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCTCTTCATTTCTAGACC
3' ss Score
11.02
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGTGCTGCTGGCCGGGCCCGGGCCGGAGGGCGGCGGGGCGCGCCGCGTGTCCCCAGAGCCACGGTCCCCACCCCGGGACGCGCAGGCCGGGGAGGACCCAGCTGACTACGAGGAGTACGAGGACTTCTCGAGTCTGCCCGACACCCGCAGCATCGCCTCGGACGACTCCTTCTACCCTTACGGAGATGAGGAGGAGTACAGCTCGGTGAGCGCGGAGAGCGCTCCGGAGCCTGTTCCGGAAGGCGTCCCGGAGGCGGCTACCCTCCTGCGCGCCGCCTGCGCCAACGACGTGGGGCTGCTGAGGGCGCTGGTGCGGCGAGGGCCCAGCGCCGAGGAGGTGCAGGAGACCGATCGCAACGGCCGG
Seq A exon
ACCGGCCTTATTGTCGCCTGCTACCACGGCTTTGTGGATACTGTGGTGATCTTAGCAGAGTGCCCCCATGTTGATGTCAACTGGCAGGACAGCGAGGGGAACACGGCCCTCATCACGGCTGCCCAGGCAG
Seq C2 exon
GGCACGTCACCATCACCAACTACTTGTTGAACTATTTCCCTGGTCTTGACCTTGAAAGGAGGAACGCATTCGGGTTCACGGCCCTGATGAAAGCAGCCATGCAGGGCCGGACAGAGTGCATCCGAGCCCTGATGCTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011337_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.746 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(64.3=29.5)
A:
PF136371=Ank_4=PD(32.1=40.9),PF127962=Ank_2=PU(32.9=61.4)
C2:
PF127962=Ank_2=FE(57.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAGGAGTACAGCTCGG
R:
CCGAATGCGTTCCTCCTTTCA
Band lengths:
252-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development