MmuEX1003903 @ mm10
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5643680-5646959:+
Coord C1 exon
chr11:5643680-5643850
Coord A exon
chr11:5644912-5645106
Coord C2 exon
chr11:5646887-5646959
Length
195 bp
Sequences
Splice sites
3' ss Seq
CAGAGTTTGATTGGTTATAGGAG
3' ss Score
2.2
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GAGTGTTCCTGACTTGTGTATAAAAGACGCAAAGGGCAGTGAGAAGGAAGCATGGAGCCCCCGCGAGCCTGTGGTCACACCGGAATTTGAGAAGTCCCCTCCAGCAGGTGCTGATCTGCTACTACTGAAGGATGGTCACCTTCTCACTAAAATGGATCGGGTTGAAGGAAG
Seq A exon
GAGTGAAGCAGACCCCGGGGAAGCTGGGCTGCAGGCCGAGTGACATCTCACCGGGAGCGTCTACAGCTGCCACAGCTGCTACCAGCATCACCATCACCCTGCAGCAAGGATGTGAACCTGCAACCTCCTCTGCCCATCCCCGGTCCTGCCCAACCCAGGCCTGGCACCATGGGTATTGGGTAGGGAGTCCAGCCT
Seq C2 exon
ACGAAATCCCAAGTAAATGAAATGGAAGAAGCTAGCCATGGAAGTGAGCCTCGTGCGCCAGCCCCAGGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_MULTIEX6-2/3=C1-3
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.911 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTCCTGACTTGTGTATAAAAGA
R:
GCACGAGGCTCACTTCCATG
Band lengths:
226-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types