RnoEX0004518 @ rn6
Exon Skipping
Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85883476-85889165:+
Coord C1 exon
chr14:85883476-85883646
Coord A exon
chr14:85886700-85886841
Coord C2 exon
chr14:85888586-85889165
Length
142 bp
Sequences
Splice sites
3' ss Seq
CGGAGTTTGATTGGTTGTAGGAG
3' ss Score
3.2
5' ss Seq
CCGGTACTG
5' ss Score
5.61
Exon sequences
Seq C1 exon
GAGTGTTCCTGACTCGTGGATAAAGGAAGCGAAGTCCAGTGAGAAGGAAGCATGGGGCCCCCCGGAGCCTGTGGTCACACCAGTATTTGAGGAGTCCCCTCCAGAAGCTGCTGGTCTGCTGCCGCTGAAGGATGGCCACCTTCTCACTAAAATGGATCCGGTTGAAAGAAG
Seq A exon
GAGTGAAGCAGAGCCCAGGGAGCCTGGGCCACAGGCCGAGTGACGTCTCACCGGGAGACTCTAGAGCTGCCACAGCTGCCACCAGCATCACCCTAGCCCTACAGCAAGGATGTGAACCTGCAGCCTCCACTGCCCATCCCCG
Seq C2 exon
ACAGAAACTCAAGTTAATGAAACGGAAGAAGGCAGCCATGGATGTGAGCCTTGTGCGACAGCCTCAGGCCGGGGTGAGTTGCCCAGCCCTTGCCATGCATGAGTCCATCGCCGCCAAGCGAAGCACCTTGGAAGGGAGTGTGCAAGGGGGTCTGCGTGAGCAGGAGGCCTCTGCTGTATGTGGGCCCTAGGTTTGTGTCCCGCAGGTTCTGAGCCCACAAGAGATGCCCTCCTTACCATACTAGACAGAGAACCACTTCAAACTCCCAGCCAAAGAGCTTTTGCGGACTCCTGCCGTGCCCTGTGTGAGAGGCACCTAAGGCGCAGTTCATCTTGCCTTAGAACTTTACCTCCTCAAACCTTGATCCACTCTGTCACTAGAACGATCTGTTTTCAGATTTCCCCTGGGTATCACTTCCCACTGCTAAACACTTGCCCTCCCTGGCTCCTCTAGCTTTTCATGGGTCTCTCTTCTGTCCACTACCCCTTTGACAAGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767-'36-40,'36-39,39-40
Average complexity
ME(38_38-39_39[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAAGTCCAGTGAGAAGGA
R:
ATGGACTCATGCATGGCAAGG
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]