RnoEX0004517 @ rn6
Exon Skipping
Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85883476-85889165:+
Coord C1 exon
chr14:85883476-85883646
Coord A exon
chr14:85886623-85886656
Coord C2 exon
chr14:85888586-85889165
Length
34 bp
Sequences
Splice sites
3' ss Seq
AAGATTTTATTTTTTTAAAGGCT
3' ss Score
5.27
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGTGTTCCTGACTCGTGGATAAAGGAAGCGAAGTCCAGTGAGAAGGAAGCATGGGGCCCCCCGGAGCCTGTGGTCACACCAGTATTTGAGGAGTCCCCTCCAGAAGCTGCTGGTCTGCTGCCGCTGAAGGATGGCCACCTTCTCACTAAAATGGATCCGGTTGAAAGAAG
Seq A exon
GCTGACAAAGAGAGACGCTAAAGAAAAGAACAAG
Seq C2 exon
ACAGAAACTCAAGTTAATGAAACGGAAGAAGGCAGCCATGGATGTGAGCCTTGTGCGACAGCCTCAGGCCGGGGTGAGTTGCCCAGCCCTTGCCATGCATGAGTCCATCGCCGCCAAGCGAAGCACCTTGGAAGGGAGTGTGCAAGGGGGTCTGCGTGAGCAGGAGGCCTCTGCTGTATGTGGGCCCTAGGTTTGTGTCCCGCAGGTTCTGAGCCCACAAGAGATGCCCTCCTTACCATACTAGACAGAGAACCACTTCAAACTCCCAGCCAAAGAGCTTTTGCGGACTCCTGCCGTGCCCTGTGTGAGAGGCACCTAAGGCGCAGTTCATCTTGCCTTAGAACTTTACCTCCTCAAACCTTGATCCACTCTGTCACTAGAACGATCTGTTTTCAGATTTCCCCTGGGTATCACTTCCCACTGCTAAACACTTGCCCTCCCTGGCTCCTCTAGCTTTTCATGGGTCTCTCTTCTGTCCACTACCCCTTTGACAAGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767-'36-40,'36-38,38-40
Average complexity
ME(38_38-39_39[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGATGGCCACCTTCTCA
R:
CTGAGGCTGTCGCACAAGG
Band lengths:
113-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]