MmuEX0005119 @ mm10
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5643680-5660838:+
Coord C1 exon
chr11:5643680-5643850
Coord A exon
chr11:5646887-5646959
Coord C2 exon
chr11:5660643-5660838
Length
73 bp
Sequences
Splice sites
3' ss Seq
GAAATAGTGCTATTTTACAGACG
3' ss Score
3.75
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGTGTTCCTGACTTGTGTATAAAAGACGCAAAGGGCAGTGAGAAGGAAGCATGGAGCCCCCGCGAGCCTGTGGTCACACCGGAATTTGAGAAGTCCCCTCCAGCAGGTGCTGATCTGCTACTACTGAAGGATGGTCACCTTCTCACTAAAATGGATCGGGTTGAAGGAAG
Seq A exon
ACGAAATCCCAAGTAAATGAAATGGAAGAAGCTAGCCATGGAAGTGAGCCTCGTGCGCCAGCCCCAGGCTGGG
Seq C2 exon
GTTCTGACAGCCCATTGAAGCTCTGGAACACAACTCACTCCGATGAAAGACTGATAGAGCTGAAGAATAGTCACTGCGAACTGCTTACAAGAAAACCTGGGAAAATGGGAAATATGAGAGAACAGACAAAAGTTAAAAAAACAAAAACCTGGTCACAGCATAAAGAAGTGGCATGGGACAAGCTCTGCACTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_MULTIEX6-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.911 A=1.000 C2=0.629
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGACGCAAAGGGCAGTGA
R:
TGTTCCAGAGCTTCAATGGGC
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types