GgaEX1002198 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24089486-24091586:+
Coord C1 exon
chr1:24089486-24089519
Coord A exon
chr1:24089735-24089873
Coord C2 exon
chr1:24091373-24091586
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACACACTGTATTGTCTGTAGGGC
3' ss Score
7.3
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACCTGCAACAAAAACAGGGAGCGAAAAGAACAAG
Seq A exon
GGCAGCATGCAAATGGATGTTACTGATGACCTTGATTTAACACAGTCATCTGATACAACTACAGAGGATGCTGAGTTGCCAACTTCAACTTACAAAGAAGCTATGTTGCTGTTTGAACAGCTTAGTGTGGATCATACAG
Seq C2 exon
ATTCTGCTATTTTGCTGAAAATTCAAAACATACTTCTTGAATATGAACAGATAATAGATTGTGAAAAAAAACGCTACACAGCTCTCTGGAGAGAAGTCAAGAAGTTGGAAAGTGAAAAAGAGGAGTCACAGTTAATAGCAGAAGAGACTCAAGATTTGAAATCCATATTGGCTCACCAAGAAATGGAATTGAAAAGTGATATCCAAAGCCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.655 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000014827fB4043
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAACAAAAACAGGGAGCG
R:
GGCTTTGGATATCACTTTTCAATTCC
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]