BtaEX0003516 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17931168-17933523:-
Coord C1 exon
chr13:17933490-17933523
Coord A exon
chr13:17933073-17933208
Coord C2 exon
chr13:17931168-17931381
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATAGTATTATTTGTGTGTAGGTC
3' ss Score
6.03
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCCTGCAAAGAAAACATCTAATGAAAATAACAAG
Seq A exon
GTCAAAGAACAAATTAATTCTGTGGATGACCTTGATGACTTAACTCAGTCATCTGAAACAGCTTCCGAGGATGGCGAGTTGCTTTACTATAAGAATTCCATGTTGCTAATTGAACAACTTGACACGGGGTGTAAAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATCCGGGATACGATTCTTTCGTATGAAAGATTAGTAGAACTTAAAAAAAGCCACTGTGAACTGCTTAAAGGAAAGATTAAAAAAATGGAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACAAAAGAAGTGAAATCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGTGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'21-23,'21-22,22-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.500 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCAAAGAAAACATCTAATGA
R:
CTGCCGAGCTCACGTTCC
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development