DreEX6100470 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3480369-3484474:-
Coord C1 exon
chr25:3484444-3484474
Coord A exon
chr25:3481181-3481322
Coord C2 exon
chr25:3480369-3480582
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGTCTCCTCTGCAGAGC
3' ss Score
11.23
5' ss Seq
TGGGTGGGG
5' ss Score
0.79
Exon sequences
Seq C1 exon
GTCTCCCTCTTCGAGGCGTAAGAAAGAGCAG
Seq A exon
AGCACCGGAGAGCTGGAGATGGCCGATGATTTTGAAGATCTTACTCAGTCCTCGGACACGGCCACAGAAGAGCTGGAGACTCCAGTGTCAGGATACCGCAACGCTTCTCTGCTCTTCAAACAGCTCGACTCCAGCTATCTGG
Seq C2 exon
ACTCTGTGAGCGTGGTGAAACTCCAGAACATGTTTCATGAGTACGAGCGCACCATCCAGAGGGAGAGAGACAGACACAGTCGACTAGCGGATAAAACCTCTCAGCTGGAGCAGGAGCGCAACGAGCTCAAGATGCTGCTGGACGAGATCAGAGGCGGCAAATCCAGCTTGGAACATCTCAAGCTGGAGCTGGAAACAGACATGAACAATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'33-32,'33-31,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.651 C2=0.542
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGGCGTAAGAAAGAGCA
R:
AGATTGTTCATGTCTGTTTCCAGCT
Band lengths:
234-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]