RnoEX6014800 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150575985-150578567:-
Coord C1 exon
chr4:150578534-150578567
Coord A exon
chr4:150578151-150578292
Coord C2 exon
chr4:150575985-150576198
Length
142 bp
Sequences
Splice sites
3' ss Seq
AAACAGTGTTTATCTTACAGGAC
3' ss Score
7.55
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
GCCTGCAAAGAAAACATCTAATAAAAATAACAAG
Seq A exon
GACAGCAAGCAGACAGCTGCTGTGGACAACCTTGACAACTTAACTGAGTCATCTGAAATGTCCTCTGAGGACCATGAGCTCCAGGGCCCTGACTACGAGCGCATTTTGTGTGAAATCGAACATCTCAGACTGGAGTGTAAAG
Seq C2 exon
ATACTGTTAGTCTGTTGAAAATCCGCGATGCTGTTTATTCTTATAAGAGATTAATAGAACTTAAAAGGAGCCACTGCGAGCTACTCACAGGGAAACTGAAAAGAGTGGAAAGCAAATGTAAGGGACTACAGAAGGAGGTGTCAGAGACGGAAGAAGTGAGGTCACGGCTGGAGCATGAGAAGCTCGCGTGGGAACAGGAGCTCTGCAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'29-26,'29-25,30-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.583 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCAAAGAAAACATCTAATAAAA
R:
CTGCAGAGCTCCTGTTCCCA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]