MmuEX6006490 @ mm9
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118477674-118479894:-
Coord C1 exon
chr6:118479861-118479894
Coord A exon
chr6:118479452-118479593
Coord C2 exon
chr6:118477674-118477887
Length
142 bp
Sequences
Splice sites
3' ss Seq
AAATCGTGTTTCCTTTACAGGAC
3' ss Score
10.34
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCCCACAAAGAAAACATCTAGTAAACATAACAAG
Seq A exon
GACAGCGGGCAGACAGCTGCAGTGGACAACCTTGACGACTTTACTGAGTCGTCTGAAACAGCCTCTGAGGACCATGAGCTCCAGGGCCCTGATTCCGAGAGCATTTTGTGTGCGATCGAGCATCTCAGACTGGAGTGTAAAG
Seq C2 exon
ATACTGCTAGTCTATTGAAAATCCGGGATGCCGTTTATTCATATAAACGATTAATAGAACTTAAAAGAAGCCACTGTGAACTACTTACAGGAAAACTGAAAAGAATGGAAAACAAATATAAGGGATTGCAGAAGGAAATGTCAGAGACAGAAGAAGTGAAGTCACGGTTGGAACATGAAAAGGTCGGATGGGAACAGGAGCTCTGCAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'23-24,'23-22,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.688 C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
PF0157614=Myosin_tail_1=PU(2.4=16.7)
C2:
PF0157614=Myosin_tail_1=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAAAGAAAACATCTAGTAA
R:
CTGCAGAGCTCCTGTTCCCAT
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: