HsaEX0004418 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27328894-27333119:-
Coord C1 exon
chr10:27333086-27333119
Coord A exon
chr10:27332355-27332496
Coord C2 exon
chr10:27328894-27329107
Length
142 bp
Sequences
Splice sites
3' ss Seq
CAGTGTTATTTATTTCATAGGTC
3' ss Score
7.83
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCCTACTAAGAAAACATCTAATGAAAAGAACAAG
Seq A exon
GTCAAAAACCAAATACAGTCTATGGATGATGTTGATGACTTAACTCAGTCATCTGAAACAGCCTCAGAGGATTGTGAGCTACCCCACTCTAGTTACAAGAATTTTATGTTGCTCATTGAACAACTTGGAATGGAGTGTAAAG
Seq C2 exon
ATTCTGTTAGCCTATTGAAAATCCAGGATGCAGCTCTTTCATGTGAAAGATTATTAGAACTTAAAAAAAATCACTGTGAACTACTTACAGTAAAAATTAAAAAAATGGAAGACAAGGTTAATGTACTACAAAGGGAGCTATCTGAAACAAAAGAAATAAAATCACAGTTAGAGCATCAAAAAGTTGAATGGGAACGAGAACTGTGCTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.542 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)