Special

MmuEX0005119 @ mm9

Exon Skipping

Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5544837-5560841:+
Coord C1 exon
chr11:5544837-5544870
Coord A exon
chr11:5546890-5546962
Coord C2 exon
chr11:5560646-5560841
Length
73 bp
Sequences
Splice sites
3' ss Seq
GAAATAGTGCTATTTTACAGACG
3' ss Score
3.75
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTGACAAAGAGAGAAGCTAAAGAAAAGCACAAG
Seq A exon
ACGAAATCCCAAGTAAATGAAATGGAAGAAGCTAGCCATGGAAGTGAGCCTCGTGCGCCAGCCCCAGGCTGGG
Seq C2 exon
GTTCTGACAGCCCATTGAAGCTCTGGAACACAACTCACTCCGATGAAAGACTGATAGAGCTGAAGAATAGTCACTGCGAACTGCTTACAAGAAAACCTGGGAAAATGGGAAATATGAGAGAACAGACAAAAGTTAAAAAAACAAAAACCTGGTCACAGCATAAAGAAGTGGCATGGGACAAGCTCTGCACTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481-'26-30,'26-29,29-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=0.629
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000105482





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000122397
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27043426-27043567 
HIGH PSI
HsaEX0004418
(ANKRD26)
Human
(hg19)
chr10:27332355-27332496 
HIGH PSI
HsaEX0004418
(ANKRD26)
Rat
(rn6)
chr4:150578151-150578292 
HIGH PSI
RnoEX6014800
(Ankrd26)
Cow
(bosTau6)
chr13:17933073-17933208 
HIGH PSI
BtaEX0003516
(ANKRD26)
Chicken
(galGal4)
chr1:24089799-24089873 
HIGH PSI
GgaEX1002198
([1])
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr25:3481181-3481322 
HIGH PSI
DreEX6100470
(ANKRD7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGAGAAGCTAAAGAAAAGCACAAG

				
R: 
GCTGTGACCAGGTTTTTGTTT

				
Band lengths: 
183-256

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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