MmuEX6083741 @ mm9
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5543683-5546962:+
Coord C1 exon
chr11:5543683-5543853
Coord A exon
chr11:5544837-5544870
Coord C2 exon
chr11:5546890-5546962
Length
34 bp
Sequences
Splice sites
3' ss Seq
AAGATTCTATTTTTTTTAAGGCT
3' ss Score
6.08
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGTGTTCCTGACTTGTGTATAAAAGACGCAAAGGGCAGTGAGAAGGAAGCATGGAGCCCCCGCGAGCCTGTGGTCACACCGGAATTTGAGAAGTCCCCTCCAGCAGGTGCTGATCTGCTACTACTGAAGGATGGTCACCTTCTCACTAAAATGGATCGGGTTGAAGGAAG
Seq A exon
GCTGACAAAGAGAGAAGCTAAAGAAAAGCACAAG
Seq C2 exon
ACGAAATCCCAAGTAAATGAAATGGAAGAAGCTAGCCATGGAAGTGAGCCTCGTGCGCCAGCCCCAGGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481-'25-29,'25-27,26-29=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGAAGTCCCCTCCAGCA
R:
TCCATGGCTAGCTTCTTCCAT
Band lengths:
128-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: