MmuEX1005576 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119307246-119308804:+
Coord C1 exon
chr6:119307246-119307341
Coord A exon
chr6:119307527-119307617
Coord C2 exon
chr6:119308677-119308804
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCCCACCCGCACCAGATC
3' ss Score
6.83
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
Exon sequences
Seq C1 exon
AGAGTCAGAGCCTGGCGTGGATGTGGCCTTCCTGGGAACCCGGGCTGGCCTTCTAAGAAGAAGCTTGTTCGTAGGCTCCGAGAAAGTCTCTGACAG
Seq A exon
ATCCCTCTCACTAAGTCCCAATGCCTTCAGCTACGGAGCTCCTCGGTGCCTCCATCAGGACTCAGTGACAAGTCCACACACCATGAGCAAG
Seq C2 exon
GAAGTTCCTGACCCCTGAAGATGAAGCCAGTATTTTTACCATGGACCACTTCCCGCTGTGGTATCGCCAGGCCTCTGAGCAGCCCCCCGGCAGCTTTGTCTTCAATCTCCGCTGGGCAGAGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.323 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000037434fB6905
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCTGGCCTTCTAAGAAGA
R:
CCCAGCGGAGATTGAAGACAA
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types