MmuEX1005577 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119307246-119312503:+
Coord C1 exon
chr6:119307246-119307341
Coord A exon
chr6:119308836-119309040
Coord C2 exon
chr6:119312423-119312503
Length
205 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTGCTCTTCCCCAGAGT
3' ss Score
10.55
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGAGTCAGAGCCTGGCGTGGATGTGGCCTTCCTGGGAACCCGGGCTGGCCTTCTAAGAAGAAGCTTGTTCGTAGGCTCCGAGAAAGTCTCTGACAG
Seq A exon
AGTGGAAAAAGGGAGATGTGGAAGAGAGGAGGACCCCAGGCCTCCCGCCCTGCCTTCCCTCCTGACACCGCAGCTTGGGACACACCTGCTGCAGCACACAGAATATGTTCCCATCCCCAGCCAGCCCTCAAGCTCCAGCATGGAGCAACGGGAAGAGATTTGACCCAAAAGCCAACCAGTCAGACTCCTGGCCCACATTCCCAAG
Seq C2 exon
ATAGCCCAGGCAAGCCAGTGGCGGTAAGGGCCAGCACAGCAGTAACTGTGACCGTGGATGGGAAGACGGCCATTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460_MULTIEX1-3/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCAGAGCCTGGCGTG
R:
GCAATGGCCGTCTTCCCATC
Band lengths:
172-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types