MmuEX1007233 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79598991-79602370:-
Coord C1 exon
chr9:79602200-79602370
Coord A exon
chr9:79601035-79601179
Coord C2 exon
chr9:79598991-79600007
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCATCTTTGACCTGTTTCAGGTT
3' ss Score
9.34
5' ss Seq
TGGGTCGGC
5' ss Score
-1.17
Exon sequences
Seq C1 exon
GTCCACAAGGCGAATCCCGAACGGGTCCACCAGGGTCTACAGGTTCAAGAGGCCCTCCTGGTCCCCCTGGTCGTCCAGGAAACTCAGGTATCCGAGGCCCTCCAGGTCCTCCTGGATATTGTGATTCATCCCAGTGTGCCAGCATCCCGTACAATGGGCAAGGCTATCCAG
Seq A exon
GTTCCGGCTAACAAATTTTCTAAGTCTCCAGTGCTGCTTACAGTTTGAAATACATGAGAATCCTGTTTCTGAGATGTTTGCGCACGTGCTTATTAGAAAATGAGTCTGTATGGAAATCTCGCGGCAGATATGGTTAACGAACTGG
Seq C2 exon
AGCCTTATGTGCCCGAGGGTGGGGCCTACCTGCCTGAACGAGAGCCCTTCATCGTGCCTGTGGAGCCAGAGAGGACAGCAGAATATGAGGATGACTACGGTGCAGATGAGCCTGACCAGCAGCACCCTGATCACATGCGTTGGCGGCGAGCCCTGCGCCCAGGCCCTGGGCAGTGAACCTGAAATCACGGGTTCACTGAGGTGGGAGGTGCTGGGATTCTCAATCACAGGTCAGACAGAGCAGCAGTGTACGTCATTTCTGTGATGTTTTCTCTGCGTCGCTTCACCCACAAGTGCTCCGATCTGACTGTAGAGAATCTTGTTTCTGCAGGCAGCCTAGCTGGCAACAGTCTGTAGACATCCATGCCTTTGCAGTTCAAATGGTTACAACACAAGCTCTTCACAGAAGCTGCATGGAGAGAACGCGTCCAGGGTGGGCTGCGGCAGCCAAGCTTCTAGGTTACCCAGCAAGCCCTGGAAACCAGAGCAGCTGTCTATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(72.4=72.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000135009fB8023
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGGGTCTACAGGTTCA
R:
TCTGCACCGTAGTCATCCTCA
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types