RnoEX0022824 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87040799-87044183:-
Coord C1 exon
chr8:87044013-87044183
Coord A exon
chr8:87042835-87042978
Coord C2 exon
chr8:87040799-87041779
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCATCTTTGACCTGTTTCAGGTT
3' ss Score
9.34
5' ss Seq
TGGGTCGGC
5' ss Score
-1.17
Exon sequences
Seq C1 exon
GTCCACAAGGTGAATCCAGAACAGGTCCACCAGGGTCTACAGGTTCAAGAGGCCCTCCTGGTCCCCCTGGTCGTCCAGGAAACTCAGGTATCCGAGGACCCCCAGGTCCTCCTGGATATTGTGATTCATCCCAGTGTGCCAGCATTCCATACAACGGGCAAGGCTATCCAG
Seq A exon
GTTCCGGCTAACAAACTTTCTAAGTCTCCAGTGCTGCTTACAGTTTGAATACATGAGAATCCTGTTTCTGAGATGTTTGCGCACGTGCTTATTAGAAAATGAGTCTGTATGGAAATCTCACGGCAGATATGGTTAACGAACTGG
Seq C2 exon
AGCCTTATGTGCCCGAGGGCGGGGCCTACCTGCCTGACCGCGAGCCCTTCATCGTACCTGTGGAGCCTGAGAGGACGGCAGAATACGAGGATGACTACGGGGCAGATGAGCCTGAGCAGCAGCACCCTGACCACAGGCGTTGGCGGCGAGCCCTACGCCCAGGCCCTGGGCAATGAACCTGAGACCACGGGTTCACCGAGGTGGGAGGTGTTGGGATTCTCATTCACAGGTCAGACAGAGCAGCAGTGACGTTTTCTCAGCGTCGCTTCATCCACAAGTGCTCCTATCTGACTGTAGAGAATCTTGTTTCTGGAGGCAGCCTAGCTCGCAACAGTCTGTAGACATCTTTGCCTTTGCAGTACAAATGGTCACAACACAAGCTTTTCACAGAAGCTGCATGGAGAGAACACACCCAGGGTGCGCTGGGGCAGCCGAGCTTCTTGGTTGCCCTGCAAGCCCTGGAAACCAGAGCAGCTGTCTCTTCAGAAAGGGCCTTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.267 C2=0.646
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000077071fB3366
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAGGGTCTACAGGTTCA
R:
ATCTGCCCCGTAGTCATCCTC
Band lengths:
252-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]