MmuEX1007320 @ mm10
Exon Skipping
Gene
ENSMUSG00000091345 | Col6a5
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105945394-105962505:-
Coord C1 exon
chr9:105962405-105962505
Coord A exon
chr9:105948326-105948420
Coord C2 exon
chr9:105945394-105946089
Length
95 bp
Sequences
Splice sites
3' ss Seq
TATTGCATTTTCCTTTTCAGAAT
3' ss Score
11.22
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCACAGAGCAGAGTTTGGTATCTACCACTGTGCTGTAGTTCTCCATTTAAAGCGTTTGCAGAAGACAGGCACTATGCAGGCTGGGTTAACGCACAGCAAGT
Seq A exon
AATAAAAATAAGAAACCCCGTTAACAGAATGAAGCTCCGGCTAATTGCGTTTGTCTTAATCCTCTGGACTGAAACCCTGGCAGACCAGAGCCCAG
Seq C2 exon
GGCCAGGCCCCGAGTACGCAGACGTGGTGTTTCTGGTGGACAGCTCCAATTACCTGGGAATTAAGTCCTTCCCATTTGTGAGAACTTTTCTCAACAGGATGATCAGCAGCCTCCCCATAGAGGCCAACAAGTACCGCGTGGCCCTGGCCCAGTACAGCGATGCTCTCCACAATGAGTTCCAGCTGGGCACCTTCAAGAACAGGAACCCCATGCTGAACCACCTGAAGAAGAACTTCGGGTTCATCGGTGGCTCCCTGAAGATAGGGAACGCCCTGCAGGAGGCTCACAGGACCTATTTCTCTGCTCCCACAAATGGGAGAGACAAGAAACAGTTCCCCCCAATCCTGGTGGTGCTGGCTTCAGCAGAGTCTGAGGATGATGTGGAAGAGGCTGCGAAGGCCCTGCGGGAAGATGGGGTGAAAATCATCTCTGTGGGGGTGCAGAAGGCTTCTGAGGAAAACCTGAAGGCGATGGCCACCTCTCAGTTCCATTTCAATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-'0-2,'0-0,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.129
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009223=VWA=WD(100=76.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGACAGGCACTATGC
R:
CTCTATGGGGAGGCTGCTGAT
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types