MmuEX1007790 @ mm10
Exon Skipping
Gene
ENSMUSG00000040205 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:MGI Symbol;Acc:MGI:1202881]
Coordinates
chr7:131317938-131322292:-
Coord C1 exon
chr7:131321966-131322292
Coord A exon
chr7:131320039-131320118
Coord C2 exon
chr7:131317938-131318152
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATAAAGCCCTGGTCCTACAGCTC
3' ss Score
3.88
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACGTAGCTGCTGAGCCCTGTGCAGAATCGGGCTGGCTGGCTTATAGCCCTCTGAGATGTGACCTGGAAGACTGAGCCCAGTGCCAGGAACTGCTGGCCAGGTTGCAGCTCCTCAGCTGTGGAGTTCTCACCAGCACCACCCCTGGGATGGCCAAACTGACACGTTTCCCTAGATACCAGGAAGCTTACAAAACTCGGAGAATTATAAGAAGCCTGAGGGTGAGGGCCCTGAGGCACCCTGCGAAGATGGAGGTCACTGGAAGGCTGTTCATCTGGGCTATTTTAGCTGTCTCCTGTGGGGCACAGCTGAATTCTACAGAGGCTGAAG
Seq A exon
CTCAGTGCGAATGAGAACTGCACTTGGACCATAGAGAGACCTGAAAACAGGAGCATCAGAATCATCTTCTCCTACATCAA
Seq C2 exon
GTTGGATCCAGGCAGCAGGTGTGAAACTGAAAACATTAAGGTGTTTGATGGAAGCTCCACCAGTGGGCCTCTGCTAGGGAAGGCCTGCAGCAGAAATGATTTCGTGCCTGTGTTTGAATCATCATCCAACTCGATGACATTTCAGATAGTCACTGGCTTGACAAAGTTCCCAAGGAGTGTCTTTATCTTCTACTATTTTTTCTCCGCTGCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040205-'0-4,'0-3,1-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(30.1=54.9)
C2:
PF0043115=CUB=PD(68.8=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCACTGGAAGGCTGTTCA
R:
TCATTTCTGCTGCAGGCCTTC
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types