GgaEX6041198 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr6:32952523-32954574:+
Coord C1 exon
chr6:32952523-32952550
Coord A exon
chr6:32953989-32954124
Coord C2 exon
chr6:32954360-32954574
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTTGTTCCCCAACAGGTG
3' ss Score
11.5
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GCTGAAGACAACCCGATAGAATTCATGG
Seq A exon
GTGAACCTCAATGCGGTGCTTCGCTCTCAGACCCCAACAAAGCACTCAAGATCAACCTCAATTCAAATGCAAACTGTCTCTGGCACATTCAGAGGAGTGAAAATCAAACAATTAGGCTCATCTTCTCTTATTTTAA
Seq C2 exon
ATTTAATCCTTCTTCAAGCTGTGAAACAGAAAGTATTAAAGTCTATGATGGCCCCTCATCTAATTCACCTCTTCTTGGACAAGTATGTAACAACACTGACGCCGTCCCAGTGTTCCAATCATCTTCAAACAGTCTGACTTTCCTCATTACAACAAACTCTGTGGCTTTCACACGGAATTTCTTTGTTTCCTATTACTACTTCTCACCAGAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023421-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(38.7=89.1)
C2:
PF0043115=CUB=PD(60.4=87.7),PF082396=SH3_3=WD(100=49.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGACAACCCGATAGAA
R:
TGTTTCTGGTGAGAAGTAGTAATAGG
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]