RnoEX0025555 @ rn6
Exon Skipping
Gene
ENSRNOG00000029945 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:RGD Symbol;Acc:619771]
Coordinates
chr1:201890375-201916436:-
Coord C1 exon
chr1:201916328-201916436
Coord A exon
chr1:201892729-201892879
Coord C2 exon
chr1:201890375-201890589
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCAACTATGCCATCTACCAGGCA
3' ss Score
3.9
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CATAGTCCGGTTGCCGCAGACCACCCAGGGGAGTGTGTCAGCAGAGTGACCAAGGCTTGGATTTCAGGTAGAGAACGGATTCGTCGCGACAGACAGATCCAAACTCGAG
Seq A exon
GCAGACCAAGATGCACGGCCAGTCTGGGAGGGGCCAATCTGGGAGAGACCCACAAGGCTCTGATCCTAAATCTCAATGCTGATGAGAACTGCACTTGGACCATAGAGAGACCTGAAAACAGGAGCATCAGAATCATCTTCTCCCACATCCA
Seq C2 exon
GTTGGATCCAGACAGTCGGTGTGAAAATGAAAGCATTAAGGTGTTTGATGGACGCTCCACCAGTGGGCCTCTGCTAGGGGAGGCCTGCAGCAAAAATGACTTCGTGCCTGTGTTTGAGTCATCGGCCAATTCACTGACGTTTCAGATAGTCACTGACTGGACAAGGGTTCAAAGGAGTGTCTTTATCTTCTACTATTTCTTTTCCTCTGGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029945_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0043115=CUB=PU(29.0=52.9)
C2:
PF0043115=CUB=PD(69.9=89.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGCAGAGTGACCAAGG
R:
ACCCTTGTCCAGTCAGTGACT
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]