GgaEX6041198 @ galGal4
Exon Skipping
Gene
ENSGALG00000023421 | CUZD1
Description
CUB and zona pellucida-like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
Coordinates
chr6:30920006-30922078:+
Coord C1 exon
chr6:30920006-30920089
Coord A exon
chr6:30921527-30921662
Coord C2 exon
chr6:30921898-30922078
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTTGTTCCCCAACAGGTG
3' ss Score
11.5
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
AAATGAAGGCGCTCAGACAGATCCTCCTGCTGCCTCTCTTAGCTGCTCTGGTTTTTGCTGAAGACAACCCGATAGAATTCATGG
Seq A exon
GTGAACCTCAATGCGGTGCTTCGCTCTCAGACCCCAACAAAGCACTCAAGATCAACCTCAATTCAAATGCAAACTGTCTCTGGCACATTCAGAGGAGTGAAAATCAAACAATTAGGCTCATCTTCTCTTATTTTAA
Seq C2 exon
ATTTAATCCTTCTTCAAGCTGTGAAACAGAAAGTATTAAAGTCTATGATGGCCCCTCCTCATCTAATTCACCTCTTCTTGGACAAGTATGTAACAACACTGACGCCGTCCCAGTGTTCCAATCATCTTCAAACAGTCTGACTTTCCTCATTACAACAAACTCTGTGGCTTTCACACGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023421-'1-1,'1-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(38.3=89.1)
C2:
PF0043115=CUB=FE(56.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGACAGATCCTCCTGCT
R:
GTGAAAGCCACAGAGTTTGTTGT
Band lengths:
248-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]