MmuEX1008656 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181685757-181690331:+
Coord C1 exon
chr1:181685757-181685850
Coord A exon
chr1:181688002-181688210
Coord C2 exon
chr1:181690079-181690331
Length
209 bp
Sequences
Splice sites
3' ss Seq
AAAAATGTTTTCCTTCCTAGATT
3' ss Score
8.91
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATTTTCCAAGTTGGTTTCTCTACGATAGCGGATATGGATAACAACATTTTTATGGGTGAACTAGAGAAAAGTTTTAAAACTCCAGAAATTCATG
Seq A exon
ATTTTGATTGGCAATGGATTGTTTTAGATGGCCCAATTGACAGCCTATGGATAGAAAATCTAAACACTGTGCTTGATGAAACTAGAACACTGTGCCTGGCAAACAGCGAAAGGATTAGCCTGACTAACAAGATCAGAATTGTTTTTGAGGCAGACTCTCTCTTTGACGCCACCCCCTCTGTCATCACCCGGTGTGCTATGGTGTACATG
Seq C2 exon
GACCCTGTTGATCTGGGATGGGAGCCTTACATGAAGTCATGGCTTCTAAAAAGTTCAAAAAGTATAAGTCAACAAGGAATTCAGTGTCTTGAAATGATGATTAATAGAAGTGTTACAAAAGGGATGAAATTTCTGAAAAAGCATAGAAAGTTTCTACCATATCCCATACAGGACGTGACAGTCGTCATTACTCTGTGCAGGATTCTAGATGCCTTTTTTGAATTCATGCATATAAAACAAGGAACTCCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'47-49,'47-48,48-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTCTCTACGATAGCGGA
R:
GGCATCTAGAATCCTGCACAGA
Band lengths:
296-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types