GgaEX6041819 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9230594-9233607:-
Coord C1 exon
chr7:9233458-9233607
Coord A exon
chr7:9231758-9231940
Coord C2 exon
chr7:9230594-9230770
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCTTTTCACCAGACC
3' ss Score
10.84
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGGCTGATGGAAGAAAACAAAGTTCAGATCACAGTTTTAAATCCCAAATCCATAACAATGGGTCAGCTATATGGACAATTTGATCCAGTTTCACATGAATGGTCAGATGGCATCCTAGCAGTGAGTTTCAGAGCATTTGCTTCTTCCCAA
Seq A exon
ACCCCAGATAGGAAGTGGCTAATTTTTGACGGACCAGTGGATGCAGTATGGATTGAGAATATGAATACTGTGCTTGATGATAATAAAAAGTTGTGCCTTATGAGTGGAGAGATCATCACAATGACACAGCAAATGAGCCTTATTTTTGAACCAATGGATTTAGAAGTTGCTTCTCCTGCTACT
Seq C2 exon
GTTTCAAGGTGTGGTATGATCTATATGGAGCCCCATATGTTAGGCTGGAGACCACTGATGATGTCTTGGCTAAATACAATGCATTCAGGAATCAGCTCTGCTCATAAAGAATTTATAGTAGGCCTGTTTGATTCAATGGCTCCTCTCTGTCTTGAGTTTATTAGGAAACACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'32-37,'32-36,33-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.0=100)
A:
PF077289=AAA_5=FE(41.7=100)
C2:
PF077289=AAA_5=PD(2.1=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGATGGAAGAAAACAAAGT
R:
AGCAGAGCTGATTCCTGAATGC
Band lengths:
252-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]