DreEX6036411 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25196459-25205212:-
Coord C1 exon
chr9:25205063-25205212
Coord A exon
chr9:25203004-25203186
Coord C2 exon
chr9:25196459-25196635
Length
183 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTGTCTCCCTAACAGAGT
3' ss Score
9.89
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
AATCTGATGGAGGAGAACAGGGTTCAAATCACTGTGATCAACCCCAAGTCTATCACTATGGGCCAGCTATATGGCCAGTTTGATCCCGTCTCCCATGAGTGGTCAGATGGAATCTTGGCTGTAAGCTATAGGGCATTCGCCATTTCCCAG
Seq A exon
AGTCCTGATAGAAAGTGGTTAATATTTGATGGGCCTGTAGATGCAGTGTGGATTGAGAACATGAACACAGTGCTGGATGACAACAAGAAGCTTTGTCTCATGAGTGGAGAGATCATCCAAATGTCCCCGCAGATGAGCCTTATCTTTGAGCCCATGGACCTGGAGGTGGCTTCGCCAGCCACG
Seq C2 exon
GTGTCTCGGTGTGGTATGATCTACATGGAGCCTCACATGTTGGGATGGCGTCCTGTGATGTTGTCCTGGCTCAACACCGTGCCGTCCACTTTGAGCTCCATGCACAAAGACCTCATTACTGGCCTCTTCGACCGCATGCTGCCTGCTTGTCTTCAGCTCATCCGCAAAGGCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.0=100)
A:
PF077289=AAA_5=FE(41.7=100)
C2:
PF077289=AAA_5=PD(2.1=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCCGTCTCCCATGAGTG
R:
TTAGTGCCTTTGCGGATGAGC
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]