RnoEX0028572 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60223589-60233787:-
Coord C1 exon
chr9:60233638-60233787
Coord A exon
chr9:60224510-60224692
Coord C2 exon
chr9:60223589-60223765
Length
183 bp
Sequences
Splice sites
3' ss Seq
CCACTCTGTATGTAAAGTAGACT
3' ss Score
1.74
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
Exon sequences
Seq C1 exon
GGGCTAATGGAAGAAAACAAGGTTCAAATAACCGTTTTAAATCCCAAGTCTGTCACCATGGGCCAGCTTTATGGGCAGTTTGACTTAGTGTCCCACGAGTGGTCTGATGGGATCCTGGCTGTCAGCTTTAGAGCTTTCGCAGCTTCCTCG
Seq A exon
ACTCCAGACAGGAAGTGGTTAATCTTTGATGGGCCAGTTGATGCGGTGTGGATTGAGAACATGAATACTGTGCTGGATGACAACAAGAAGCTGTGTCTGATGAGCGGGGAGATTATTCAAATGTCACCACAAATGAATCTGATCTTTGAACCAATGGACCTAGAAGTCGCCTCTCCTGCCACT
Seq C2 exon
GTTTCTCGGTGTGGCATGATCTATATGGAGCCTCAGATGCTGGGCTGGAGACCACTGATGGTGTCCTGGATAAACACTTTACCACAGTCAGTCAGTATCATTCAGAAGGAGTTTATAGAAGGCTTGTTTGATAGAATGGTGCCTCTTTCTGTTGAGTTCATTAGAAGGCATACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'27-32,'27-31,28-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.0=100)
A:
PF077289=AAA_5=FE(41.7=100)
C2:
PF077289=AAA_5=PD(2.1=5.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCATGGGCCAGCTTTAT
R:
ACTCAACAGAAAGAGGCACCA
Band lengths:
256-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]