MmuEX6024118 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46268094-46271319:+
Coord C1 exon
chr1:46268094-46268243
Coord A exon
chr1:46270183-46270365
Coord C2 exon
chr1:46271143-46271319
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTTATCCACTCTGCATGTAGACT
3' ss Score
6.9
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
Exon sequences
Seq C1 exon
GGACTAATGGAAGAAAACAAGGTTCAAATAACTGTTTTAAATCCCAAGTCTGTCACCATGGGCCAGCTTTATGGGCAGTTTGACTTGGTTTCCCACGAGTGGTCTGATGGGATCCTGGCTGTCAGCTTTAGAGCGTTCGCAGCTTCCTCG
Seq A exon
ACTCCAGACAGGAAGTGGTTAATCTTTGATGGGCCAGTTGATGCCGTGTGGATTGAGAACATGAACACTGTGCTGGATGACAACAAGAAGCTGTGTCTGATGAGTGGGGAGATTATTCAAATGTCACCACAAATGAACCTGATTTTTGAACCGATGGATCTGGAAGTCGCCTCTCCTGCCACT
Seq C2 exon
GTTTCCCGGTGTGGCATGATCTACATGGAGCCTCACATGCTAGGCTGGAGACCACTGATGGTGTCCTGGATAAACACGTTACCACAGTCAGTCAGTATCATTCAGAAGGAATTTATAGAAGGCTTGTTTGATAGAATGGTCCCTCTCTCTGTTGAATTCATCAGAAGGCATACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'33-32,'33-31,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.0=100)
A:
PF077289=AAA_5=PD(44.4=53.3)
C2:
PF077289=AAA_5=PD(2.1=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCATGGGCCAGCTTTAT
R:
TCAACAGAGAGAGGGACCATTCT
Band lengths:
254-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: