MmuEX1008796 @ mm10
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:161982453-162011104:-
Coord C1 exon
chr1:162010868-162011104
Coord A exon
chr1:162006207-162006445
Coord C2 exon
chr1:161982453-161982636
Length
239 bp
Sequences
Splice sites
3' ss Seq
TTTGCGTTCCTCACATCAAGGTT
3' ss Score
7.02
5' ss Seq
GAGGCAAGC
5' ss Score
2.09
Exon sequences
Seq C1 exon
GTCACCTCCTCCGAGCCCCACCACCCAACGAAGGCTGACGATAAGTGCTCCCCTCCCAAGGCCCACATCTGGCCGTGGGCCAGCTCCCGCTATCCCCTCTCCAGGCCCCCACTCCGGAGCTCCCCCAGTTCCATTCCGTCCTGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTTTGGAGCCCCTCCGCAAGTTCCGTCCAGGCCCACCAGGGCACCCCCCAGTGTTCCAAG
Seq A exon
GTTTGGTGCCGTGAAGGAGGAAGCTGTCGAGCCTTGAAGTCGAGGGGCTCAGAGTACATGGAAATTAAGCAACCCGTGTGACTAGCCTGGGAGTCATTCCCCTGCGGTCACACACGGAAACATCCTGACTTACCCTCTCCTCTCCTCGACAGCTCTCTAAAACTGTGGTGTTTTTAGCAGCCAAGTGTCATTTGGACAAGTGGTGAAATCACCTTGCGATTTGTGACATCAGCTGTGAG
Seq C2 exon
GAGACCCCCTCCTGCAGTTCCAGGCCGACCATCCTAACCCCATCTCCTTTTGTTTAACAACATGTCTACCCATGGTATTTTTAAAAAGCCTCTGTTTGCACTATATGTCATGTGTACATAAGAGCTTTTATTTTTGACCTGTGTCTTTAATTAAAGAAATAAAGTTTATTCTATATTTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000159763fB8983
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGTGCTCCCCTCCCAAGG
R:
TGACATATAGTGCAAACAGAGGCT
Band lengths:
307-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types