MmuEX1011613 @ mm10
Exon Skipping
Gene
ENSMUSG00000086129 | Gm13558
Description
predicted gene 13558 [Source:MGI Symbol;Acc:MGI:3702047]
Coordinates
chr2:58713886-58735396:+
Coord C1 exon
chr2:58713886-58713990
Coord A exon
chr2:58721766-58721847
Coord C2 exon
chr2:58735117-58735396
Length
82 bp
Sequences
Splice sites
3' ss Seq
AATCATAATTCTCTGTGTAGGGA
3' ss Score
6.78
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTTTGCTTCCATGGCTCCTGTAGAACCATGGTCTACAGCTCCAAGACTGTGTCCCATTGGTCTACCTTGTTCTGCAGCTCCCAAACACCCGCTCCTTCTCTTCT
Seq A exon
GGAGCCTCGGCTGAAGAAAGAAATTGATTGGTGCGGAGAAACCCACCCTGATTGTGGATGGCCCCTTCTGGCAGCAGTCCAG
Seq C2 exon
GTTTATGCCAAACACCCAGGAAGGGGTAGAGAATCTTCCCGCATTTCTCCTGATGGGCAATGAAACAACATGGCTTCCAACTGGGAACATTTACTGAAAACCCAAAACAAAAGAAGTGAATGGCAGAAGACATACATAACCCCCTGGGCTGTGATCTCTAAATTCCACATTCAGAAGCCTTGACTGTGGACATTGAGGGAGTGAAGAAAGCATTGACACAGAAAAAGCAATACAGCGGGGTCAGGTGGGGCTTTCTAATGGCTACTACAGCAGCTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086129-'2-4,'2-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000071543fB19144
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCCGCTCCTTCTCTTCT
R:
TTAGAGATCACAGCCCAGGGG
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types