MmuEX1027406 @ mm10
Exon Skipping
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58567298-58755422:+
Coord C1 exon
chr2:58567298-58567528
Coord A exon
chr2:58632665-58634901
Coord C2 exon
chr2:58755358-58755422
Length
2237 bp
Sequences
Splice sites
3' ss Seq
CTTCTTACTTTCTCCTCTAGAAC
3' ss Score
10.9
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACACATCATTTCCTCCCGGCGCGGATCCAGGGAGCCGGGAGGGAGAGGGCCGGCGGCGGGGCGGGGCGCTCCTCGCGCCCCCTGCAGGCGCCCGGCCCCAGGGATTCCGCCCGCCTAGCCATGCTCGCCCGCCGCCCCCGACCCCCGACCCTTCGGGCCGCCCGGGCTGTGGGCTGCTGCGAGCCGGGCTGGCGGGACGCGGGGGAGGCGCGCGGCACGGGGAGCGGCCAG
Seq A exon
AACCTCAGCTTGCACTTCTGACTGACAGAGAAAGGAAAGACTCGAAGGAGGATCGCTTCTCTAAGCCGTGCAGCCAAAAACCAGTGCTGGGGTGTGTCATCCAAAAGTTTATACCTGCCTGTCAGGCTTCCCCACCTTTGTCTGGAACAGCACTTTTATTTAGGAGAGATGATCGTAGTGTGCCTGTCCATCATGTGGTCCTATTGAACACAGGAACCAGGAGATCCAGGCAGAGTGTGAGAACACTCTCTGGACACAGCAACTGGCCAAGAAGAACTGGTCAGGTTCCTTTTAAAGACTCGACACAGATGAGAGGAAAAGAAGTGCCATCTTTGAGTCAGCATGGGACAGTCTGGGGCTGCTCTGCTATGGGCAGAAGTTGTGTGCCCCAAAATGGAGCTAACATAGAGAGAGGGGCACAGAATGTAGAGAGCAAGACAAAGACTCAAGTCCGGATGCTGTAGGATCTACATTTGGGGAAAGCTCATCTCTCAGTTGGTTCCCTTGATTTAGTAAAGACTGATGTGAGTTTATTTCCAGTTTACTTCTTGCGATGTCGTGGAGGCCATGAAGGTTGTAGTTCTTGTTGAACTTTCCATGCCCAGGGCTTAGTGCTCACCTCTGCTCAGAATGAGCAGTTCCCACTGAACCAATAAATGTACCAGCCTCACGGCTCTTCACACTATCTCTGCTTTCTTTGGTAACTCCATGCTAGAAATGCTTTATAGCCTTTTCCATGGTCAAAGCAGACAGAGAGAGCATTGGTGAAGCATACAGGCTCCAGGGTAGGCGAGGCTAGGCTCAGATAAAAAGGGAAAACCTTGCTAAGTTGTAAATTCTTCCCAGTCCAATTGTCCTATCTATAGAATGAGGACAGTATCATTATCATTTATGAAGAAATCCTCATCTTTGTCGCTGCATTTTTTTTTCTTCATTTGTTTAGTAATTTGTACCTGCCACCCTGGTACGGGGTAGGTATTCATCTGGAGCAAATCTAGTGGTTAAAACAACGAAAGACGCCTCACATCTATGGAAGGCTAGTTTCCATAGTTAAACCTGTGCTGTAGACCTAGAAAGGCATCTAGGGCTGACCTCCTCTTACCCTCCCTGGCACTGTCTGCACAGCTCTTCTGATTGGTGACTCAGCCCAGATGCCTTCCAATAAATCTCTTCGGTTTGTTTGTGTACAACGCAACCAAGGAGCCCGAATGAATAAACCCACCTCAAAAGCTTGTACCGAGAATCAGGCAAGATGCTACACGTGAAGCAAGGAGCACAGTCCTGGAAAATGAATACGTCATCAGTCAGGGTTACTCACTTTCATTGCGGCAATCTGACTGTTTACTTGAGTCCTACTCAGTTAAGCAGATTCCTCTTTGTTGCTGAGACATCAACTGCATGGAGCGGCCCGTGGCTTCTTACTCATGTCTTCAGAGATAGTAAGGATCAGATGGTGAGAACAGCTATCTGTCTGTCTTTCTCAAGATAACGTCTTGCTACATAGCCCCGATTGTCCTTGAACTTGCAATTCTCCTCTGTCAGCCTTGGACTGTTGGGATTGCATGATGCTTACTCACACCATGCCTCGTTGAGAAGTGTCTTTACAGAAAGCAGGCAAGGAGGATTGTTAGCTTCAGGATAGCCTGGGCTACAATATATACCTTAGATATATATTTAAATGAGTCAAAAGAGAAGATGATGGAAAGACAATGGCACAGTTTGTATGACATGACCACCATTTAAGAACTGACAGCTCCTAGAAAATGGCAGAGTCAAGGGCTATTGTTCCCTGAAATACCCGGAGGCCAGTCACCTACTCATGGTGGGTTTCTGGATCTCTGGTCTTCAGAATTCCTACTGAATAACTTTCTACTGTTTGAAGCCATGAAGTTCATGACTTGTTATAGTAGCCACAGGAAGTGGATATATACATTATCCTGAATGACTTTGTCAAATGTATTGAGACCCCAGACATCCAACCGCTAGAGTGAAGAGAAACGTAACTCAATTTGTAGAAAGTATTCAACTCTTTCCTACTTTGCTAATGTTTTCAAAAACTGGGCTGTCACTGGGTGTATTGTTACCTGCTCTGGTGTCACAGACTGCCACCGTAACCCTTTGGGTACAAGTTCCTGGAGCCACATGCCTTCCAGAGCTGCAGTTCCCAAAGCTGTAAAGGGGCTACTGGGGTTGACGCCAATACTAAAGCCACCTTCCATCCCACCACTTTCTCATGG
Seq C2 exon
AGTATGGCTTCCATTTTGCCTGCTTCTAATAGATCCATGAGACCTGACAAGAATACATACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839_MULTIEX1-3/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=1.000 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000071543fB19143
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types