MmuEX1027404 @ mm10
Exon Skipping
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58617628-58627181:+
Coord C1 exon
chr2:58617628-58617728
Coord A exon
chr2:58624593-58624645
Coord C2 exon
chr2:58627081-58627181
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTATCTCCTAGAAA
3' ss Score
10.18
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTTTAGCTTTTTTCAATATCCTGAACCGGGAAGGGAGGAGCATCCTAGGAAAGAAGAATGTAGCTGAAGAGATGGCTCAGCACATAAGAACACAGACCCAG
Seq A exon
AAACCTTTTCTTTTCTAATGAGACACAGAGAGAAGATCCAAATGGGAGAAGAG
Seq C2 exon
GAAGAAGAAAGAAACACGCAGAAAGGCCCTGGGGAAAACGTAGCCTGGCTTAGGAATTAGAAGGTGCCTACCAAGGCTAGGGAGGACAGAATGGGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839-'9-10,'9-9,10-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSMUST00000071543fB19142
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAGATGGCTCAGCAC
R:
ACCCATTCTGTCCTCCCTAGC
Band lengths:
135-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types