MmuEX1027405 @ mm10
Exon Skipping
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58567298-58635281:+
Coord C1 exon
chr2:58567298-58567528
Coord A exon
chr2:58627081-58627198
Coord C2 exon
chr2:58632665-58635281
Length
118 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTAATTCTTCACAGGAA
3' ss Score
7.76
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACACATCATTTCCTCCCGGCGCGGATCCAGGGAGCCGGGAGGGAGAGGGCCGGCGGCGGGGCGGGGCGCTCCTCGCGCCCCCTGCAGGCGCCCGGCCCCAGGGATTCCGCCCGCCTAGCCATGCTCGCCCGCCGCCCCCGACCCCCGACCCTTCGGGCCGCCCGGGCTGTGGGCTGCTGCGAGCCGGGCTGGCGGGACGCGGGGGAGGCGCGCGGCACGGGGAGCGGCCAG
Seq A exon
GAAGAAGAAAGAAACACGCAGAAAGGCCCTGGGGAAAACGTAGCCTGGCTTAGGAATTAGAAGGTGCCTACCAAGGCTAGGGAGGACAGAATGGGTTTGAGCCCGGCAGCTGGAGAAG
Seq C2 exon
AACCTCAGCTTGCACTTCTGACTGACAGAGAAAGGAAAGACTCGAAGGAGGATCGCTTCTCTAAGCCGTGCAGCCAAAAACCAGTGCTGGGGTGTGTCATCCAAAAGTTTATACCTGCCTGTCAGGCTTCCCCACCTTTGTCTGGAACAGCACTTTTATTTAGGAGAGATGATCGTAGTGTGCCTGTCCATCATGTGGTCCTATTGAACACAGGAACCAGGAGATCCAGGCAGAGTGTGAGAACACTCTCTGGACACAGCAACTGGCCAAGAAGAACTGGTCAGGTTCCTTTTAAAGACTCGACACAGATGAGAGGAAAAGAAGTGCCATCTTTGAGTCAGCATGGGACAGTCTGGGGCTGCTCTGCTATGGGCAGAAGTTGTGTGCCCCAAAATGGAGCTAACATAGAGAGAGGGGCACAGAATGTAGAGAGCAAGACAAAGACTCAAGTCCGGATGCTGTAGGATCTACATTTGGGGAAAGCTCATCTCTCAGTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839_MULTIEX1-2/7=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000071543fB19142
Main Skipping Isoform:
ENSMUST00000071543fB19143
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCATTTCCTCCCGGCG
R:
GTCAGAAGTGCAAGCTGAGGT
Band lengths:
252-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types