MmuEX1027407 @ mm10
Exon Skipping
Gene
ENSMUSG00000026839 | Upp2
Description
uridine phosphorylase 2 [Source:MGI Symbol;Acc:MGI:1923904]
Coordinates
chr2:58567298-58755422:+
Coord C1 exon
chr2:58567298-58567528
Coord A exon
chr2:58735117-58735360
Coord C2 exon
chr2:58755358-58755422
Length
244 bp
Sequences
Splice sites
3' ss Seq
CCAACCTTTTTCTTTAACAGGTT
3' ss Score
11.19
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
ACACATCATTTCCTCCCGGCGCGGATCCAGGGAGCCGGGAGGGAGAGGGCCGGCGGCGGGGCGGGGCGCTCCTCGCGCCCCCTGCAGGCGCCCGGCCCCAGGGATTCCGCCCGCCTAGCCATGCTCGCCCGCCGCCCCCGACCCCCGACCCTTCGGGCCGCCCGGGCTGTGGGCTGCTGCGAGCCGGGCTGGCGGGACGCGGGGGAGGCGCGCGGCACGGGGAGCGGCCAG
Seq A exon
GTTTATGCCAAACACCCAGGAAGGGGTAGAGAATCTTCCCGCATTTCTCCTGATGGGCAATGAAACAACATGGCTTCCAACTGGGAACATTTACTGAAAACCCAAAACAAAAGAAGTGAATGGCAGAAGACATACATAACCCCCTGGGCTGTGATCTCTAAATTCCACATTCAGAAGCCTTGACTGTGGACATTGAGGGAGTGAAGAAAGCATTGACACAGAAAAAGCAATACAGCGGGGTCAG
Seq C2 exon
AGTATGGCTTCCATTTTGCCTGCTTCTAATAGATCCATGAGACCTGACAAGAATACATACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026839_MULTIEX1-7/7=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=1.000 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000071543fB19144
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCATTTCCTCCCGGCG
R:
TCGTATGTATTCTTGTCAGGTCTCA
Band lengths:
292-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types