MmuEX1014251 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21308347-21315131:+
Coord C1 exon
chr5:21308347-21308447
Coord A exon
chr5:21312169-21312378
Coord C2 exon
chr5:21314854-21315131
Length
210 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTGATTGCCTTTCAGAGA
3' ss Score
8.78
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
AACTGAAGGTTGCGGGTTGTTTTGTTTTGTTGTTGTTTTTGTTGTTGTTTGCTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTG
Seq A exon
AGAAAGAAGGCAAGACCCGATTGCTGACCACATACACTTCAGACACAGGACTTGGAGGAACTGAGCTGGACCTGAGCTGGAAGCCTCTACCCCAAGAACTAGCTCTCATAGTAACAAAAGGAGCTGCCAAGGGAGAAAAGCAATCAATAGTCTTATGCAGCTGTAATGCCTGTGAACCACAACCATCAGAATGTCAAGATATTCTGAAAG
Seq C2 exon
GGACCCACCAGAAGGCATGCTTGCTTTCCCCGAGACCAGCAGATGGACTAGAAACACGGGGCATGCTGTATGACGTTGCATACTATATGAAGAGATCTCAAAGAATTCAGCTGAAGCAATAGCATTGAATTAAGAAGAGAACTTGATGAAAGCCAGGGCTTCTTTCCTTCTAAGTCTGTGTGTTCAGAGTTCCAGTTTAACATTCTGATGTGTTGTGCTCTAGGCTAAGCAGTATCTTGTAAATTAGTCAACCTTTCAATAAAAATAACTTTCAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'57-56,'57-55,58-56
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGGTTGCGGGTTGTTT
R:
ACTGGAACTCTGAACACACAGAC
Band lengths:
296-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types