MmuEX1014252 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21290045-21315132:+
Coord C1 exon
chr5:21290045-21290144
Coord A exon
chr5:21290538-21290712
Coord C2 exon
chr5:21314854-21315132
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCACCCATTCCCAGCAC
3' ss Score
5.89
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CCTCGGAACTCCATGATTGACAAATCATCATTTCCGGTAGAATTTCTGCCTCTGAACTACTTCATCGAAATTCTGATGGGCCTGGAGTCCTCCAACCAAG
Seq A exon
CACTGTATGGCTTTGAAGGACATGACAATGTGGACGCAGAATTTGTAGAGGAAGCTGCTCTGAAACACACCACCATGCTTTTGGGCTTATGAAAGTGGACGTGCAGACGGACGATTTCAATATTTTCACCTCCCTTTTCTGGAAACTTTCCCACTGTCTTTAAGATTGGGAACAG
Seq C2 exon
GGACCCACCAGAAGGCATGCTTGCTTTCCCCGAGACCAGCAGATGGACTAGAAACACGGGGCATGCTGTATGACGTTGCATACTATATGAAGAGATCTCAAAGAATTCAGCTGAAGCAATAGCATTGAATTAAGAAGAGAACTTGATGAAAGCCAGGGCTTCTTTCCTTCTAAGTCTGTGTGTTCAGAGTTCCAGTTTAACATTCTGATGTGTTGTGCTCTAGGCTAAGCAGTATCTTGTAAATTAGTCAACCTTTCAATAAAAATAACTTTCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGATGGGCCTGGAGTCC
R:
GCCTAGAGCACAACACATCAGA
Band lengths:
256-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types