MmuEX6016097 @ mm10
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:21305513-21309688:-
Coord C1 exon
chr5:21309593-21309688
Coord A exon
chr5:21308613-21308783
Coord C2 exon
chr5:21305513-21305601
Length
171 bp
Sequences
Splice sites
3' ss Seq
AATCCTTTGCTTCTCAAAAGAAA
3' ss Score
4.64
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATGGAAGCTATCCCAAAAGAATACCTTACATTGCCTGAACGAAGGAAAGAGCTCCACAAAGAGGTTGATCTAGCTAGGAGAAATCTGGCTCAACAG
Seq A exon
AAATCTCTGTCAGAAGCTGAGGCCAAGTTAGTGGAGCAGCAGATTGCACAGGAGAACAAACTTCTAAAGGAGCAAGAAAGTTTGCGGGAGCTGGTGTTCAACCTCGGGCGAATGACTCAGATCAAAATAGATGAGAAAGAACAAAAGGCTAAGGATTTCCTGAAAGCCCAG
Seq C2 exon
CGAAGATATAGTGAGATTGTTAAGGAAATCAAATCAAAGGACCTTGAAATCAGGCTATACAAGAAGAGAAAGCATGAAATTCATAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTATCCCAAAAGAATACCT
R:
CTCCTATGAATTTCATGCTTTCTCT
Band lengths:
183-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types