BtaEX0007385 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44165840-44170505:-
Coord C1 exon
chr4:44170410-44170505
Coord A exon
chr4:44169343-44169513
Coord C2 exon
chr4:44165840-44165928
Length
171 bp
Sequences
Splice sites
3' ss Seq
TATTTGTGTTTTTCCAAAAGAAA
3' ss Score
4.64
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATTGAAGCTATTCCTAAAGATGATTCTACATTATCTGAGAGAAGGCGAGAACTCCATAAGGAAGTTGAAGTAGCTAAGAGGAATTTAACCCAGCAG
Seq A exon
AAAATCCTATCAGAAGCTGAGTCTAAGTTAGTAGAACAGCAACTTGCTGAGGAAAACAAGCTTTTAAAGGAGCAAGAAAACATTCAAGAACTGCTTTTCAACCTTGTCCGTATGACTCAAATCAAAATTGATGAGAAGGAGCAAAAATCCAAGGATTTCCTGAAAGCTCAG
Seq C2 exon
CAAAAATATACCAGCATTGTTAGGGAGATCAAAGCAAAGGATCTTGAAATCCGGATACACAGGAAGAAAAAACGTGAAATTCATCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTACATTATCTGAGAGAAGGCG
R:
TTTTTCTTCCTGTGTATCCGGA
Band lengths:
146-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development