GgaEX6000484 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13704309-13707627:-
Coord C1 exon
chr1:13707532-13707627
Coord A exon
chr1:13705850-13706020
Coord C2 exon
chr1:13704309-13704397
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTGAATTTGGTTTCCTTCAGGAG
3' ss Score
8.53
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAGAAGCCATCCCTAAAATTAATGGAGTATTACTAGAAAGAAGACGAGAACTGCAGAAGGAAATAGAAATGAAAAAGAGATGTTTAGCTGAACAG
Seq A exon
GAGATGGTATCGGATACGGACGCCCGCAGGTTAGAGGAATGTATTGCTGAAGAAGGCCGGCTGTTCAAGGAGCAGGAGAAATGCCGCAGTGAGTTATCCAGACTTGCACATCTGACGTGGCTCAAAGTTGAAGAGAAGGAACAGAAATCCAGGGAAGTTCAGAAAGTCCAG
Seq C2 exon
ATACAACTTCAAAATATTATTAAAGAAATAAAAAGAAAGGATCTTGAAATAGAAGAGTATAAAAAGAGGAAAAGAAGAGTCCATAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'13-13,'13-11,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGCCATCCCTAAAATTAATGG
R:
TGTTTATGGACTCTTCTTTTCCTCT
Band lengths:
185-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]