DreEX0019423 @ danRer10
Exon Skipping
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20462962-20471041:+
Coord C1 exon
chr4:20462962-20463254
Coord A exon
chr4:20469217-20469387
Coord C2 exon
chr4:20470817-20471041
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTATTTGGGAGTAGCAG
3' ss Score
0.89
5' ss Seq
CAGGTTATT
5' ss Score
3.49
Exon sequences
Seq C1 exon
CTCTTCTCCACTGGAAAGATCAGCGTGGAAAAAGTGGCTCGTCTTAAAGCCAGTTTCAACCTCTTAAATGAAACTCTGAGAAGTTCTCAGGACTCTGAAATGCAATTGCTCCTGGAGGCGAAGACCTTGCGCATGACATTAGAGCAGCAAAGGCAGGAGCTGGAGAATGCTGAACTTTTTCCTGAGGGACCAGACACAGAGGTCAGCAGACTGAAGCAGACACTCCTGCAGTACTACAACCAACTGAAGGAGGACGAAGAAAGAGATTATCAGATGCAATTTCAGCTTGAGTG
Seq A exon
CAGTCTATGGCAGGGATGAAGGTCCAGCTGGTTCAAGAGTATGTTGAGAAGGAGCAGGCTTTGATTAGAGAGTCTTATCGCCGCAGAGATGAGCTTCATCACCTTCATCATCTCATACTTATCAAAACAGACGAAAAAGAGCAGAAGAGCCGTGAGCTACTGAAAGCACAG
Seq C2 exon
GTTACTGCAGAGATCTCGTCTACAACACTCTCACAGCTACAAGCTAAGAGACGATCTGAAGAAGGAGGTCTCACAGACATTACAGGCTTTGCAGGAGATGCAACAAAATCGAGAGGAGCAAAAACTAAAACTCAGGAAGCTCACGGACACCGTGAACATGCTAGAGCAAAAAAAGCTACATATCTGCAAGCGCTATGAGGCCGAACTGCAAAAGCGGAATCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794_MULTIEX1-7/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.336
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACTGAAGCAGACACTCC
R:
GCTCTAGCATGTTCACGGTGT
Band lengths:
255-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]