GgaEX6000484 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12549067-12552140:-
Coord C1 exon
chr1:12552045-12552140
Coord A exon
chr1:12550363-12550533
Coord C2 exon
chr1:12549067-12549963
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTGAATTTGGTTTCCTTCAGGAG
3' ss Score
8.53
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAGAAGCCATCCCTAAAATTAATGGAGTATTACTAGAAAGAAGACGAGAACTGCAGAAGGAAATAGAAATGAAAAAGAGATGTTTAGCTGAACAG
Seq A exon
GAGATGGTATCGGATACGGACGCCCGCAGGTTAGAGGAATGTATTGCTGAAGAAGGCCGGCTGTTCAAGGAGCAGGAGAAATGCCGCAGTGAGTTATCCAGACTTGCACATCTGACGTGGCTCAAAGTTGAAGAGAAGGAACAGAAATCCAGGGAAGTTCAGAAAGTCCAG
Seq C2 exon
CCTACAGAATAAAATGAACAATCATGGAAGAGGCAGAAATTCAGATAGCCTCAACTGAGATCCTTGGATGTACAAGAAGGTTGTTTTGTTTCGCAAATATATTGACATCAGAACTACTATTCACTCGAAGGAGAGACACCAATTCTTATTTTCCTGATACACTTCAATATATAAATCAGTCTATTAACTTGAAGGAAGAGGGAAAAATCCCCTGTTCTTCTGACTAAATAACAGGAACAAACTATTTACACTTCCATAATGTATTAAAATAAATTGTAAATCTGTATTAAAATAAATTGGACTGGCCACCATTATAGTATGTTGTGAATTATTGACTGTCAATAGAAATAGTCAAAGGAGCAGTTCAGGCTTTGCAAATTCAATAAAAATAAGCTCATAAACAGAACAAATCATTAAGAATATAATTTTGTTAACAAACACTCCTGCCCGGAACTGCAACCAGACATCCACCAGCTTTTCTAATGCCTATATTCTCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'15-19,'15-17,17-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGCCATCCCTAAAATTAATGG
R:
AGAATTGGTGTCTCTCCTTCGA
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]