RnoEX0017638 @ rn6
Exon Skipping
Gene
ENSRNOG00000012932 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr4:10391291-10395520:+
Coord C1 exon
chr4:10391291-10391386
Coord A exon
chr4:10392194-10392362
Coord C2 exon
chr4:10395432-10395520
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCCTGTGCTTTTCAAAAGAGATC
3' ss Score
-7.79
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ATGGAAGCTATCCCCAAAGAAGACCTTTTATTGCCTGAGCAAAGGAAGGAGCTCCACAAAGAGGTTGACCTGGCTAAGAGAAATCTGGCTCAGCAG
Seq A exon
ATCTCTGTCAGAAGCCGAGGCCAAGTTAGTCGAGCAGCAGATTGCGGAGGAAAACAAGCTTTTAAAGGAGCAAGAAACTATGCGTGAGGTGCTGTTCAACCTCGGGCGAATGACTCAGATCAAAATGGAAGAGAAAGAACAAAAGGCTAAGGACTTCCTGAAATCCCAG
Seq C2 exon
CGAAGATACTGCGACATTATTAAGGAAATCAAATCAAAGAAACTTGAAATCAGGCTATACAGGAAGAGAAAACGTGAAATTCATCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012932-'26-37,'26-36,27-37
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTATCCCCAAAGAAGACC
R:
TCCGATGAATTTCACGTTTTCTCT
Band lengths:
182-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]