Special

MmuEX1016419 @ mm10

Exon Skipping

Gene
Description
leucine rich repeat containing 14B [Source:MGI Symbol;Acc:MGI:2145269]
Coordinates
chr13:74359578-74364005:-
Coord C1 exon
chr13:74363615-74364005
Coord A exon
chr13:74363073-74363224
Coord C2 exon
chr13:74359578-74361399
Length
152 bp
Sequences
Splice sites
3' ss Seq
CACTCACCTTGCCCACCAAGGCC
3' ss Score
3.65
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CTTTGGGAAGAACATCGGGGACAGCGCCACTCTGACCAGGGGCACGATGAGGTCGCTTCGTTTCATTTCTGCTGAAGCGTTAGTGTCCCACTCCCAGCTGGTCCAGGAGAACCTGGACAATATAGCCTACAACCTCTACCCACTTCTGTTCAAGGCCAGTTACCTGCTAGAGCAGGCAGATGTAACCCGTGCTCTGCTGAGTCACTGGCCACTGGAGGAGTTCCGGCTGGCTGTGCTACTGAGGCCAAACACTGACCACCCTGAAGACCTGCGTGATCGTGCCTGCAAGGCCTGCCTGGAGGCCTGTATGCAGGGCATAGCTGACCATGTGCTGAAAAGTGGGAGCAACCGCCTTCGGGTAGCTGATTTCACCGGCATCCAGGACGTACAG
Seq A exon
GCCTTCGATGCTCCCCCAACTTGTGCCCCAGATCCAGAGGGCGAGGATCTTCTCCTTACCTCTATTGCCTGGGAGCTCAGCCAGATGAACCAGCTCACTGAGCTAAGTGTGGCTTTCTCTACACTCACTGGGAAGATCCAAACATTGCTTAG
Seq C2 exon
CCCCTTGAAGACCCCACTAAGAGTGTTGGACCTAGCCAACTGTGCCCTTAATCATGAAGACATATCCTTCTTAGCAGACTGTAACCACACTGCCCACTTGGAGGTGCTGGACCTCAGTGGACACAACCTGGTACACCTGTACCCTTCTACCTTCTTCAGGCTGCTGAGCCAGGCTGCCCAAACACTGAGAGTGCTCACCCTCGAGGAGTGCAACATCACAGACAGCCATGTTAACATGATGATTCTGGGCCTTAGCCCTTGCAGCCAGCTCCAGCAGTTCAAGTTTCTTGGAAACCCGCTCTCAGGCAGTGCTCTCCGGCGCCTTTTTGCTGCACTCTGCGAACTCCCTAGGCTTCGCCATATTGAGTTCCCAGTACCAAAGGACTGCTACCCCGAGGGTGCCATCTACCCTCAGGATGAACTGTCAGTGTCCAAATTCGACCAACAGAAATACGACGTGATTGCAGAGGATCTTCGAGCAGTACTGCTTCGAGCTAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021579_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

In the CDS, with uncertain impact

No structure available
Features
Disorder rate (Iupred):
  C1=0.020 A=0.020 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF138551=LRR_8=WD(100=31.9)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCTGATTTCACCGGCAT
R:
GTGATGTTGCACTCCTCGAGG
Band lengths:
253-405
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types