MmuEX1016419 @ mm10
Exon Skipping
Gene
ENSMUSG00000021579 | Lrrc14b
Description
leucine rich repeat containing 14B [Source:MGI Symbol;Acc:MGI:2145269]
Coordinates
chr13:74359578-74364005:-
Coord C1 exon
chr13:74363615-74364005
Coord A exon
chr13:74363073-74363224
Coord C2 exon
chr13:74359578-74361399
Length
152 bp
Sequences
Splice sites
3' ss Seq
CACTCACCTTGCCCACCAAGGCC
3' ss Score
3.65
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CTTTGGGAAGAACATCGGGGACAGCGCCACTCTGACCAGGGGCACGATGAGGTCGCTTCGTTTCATTTCTGCTGAAGCGTTAGTGTCCCACTCCCAGCTGGTCCAGGAGAACCTGGACAATATAGCCTACAACCTCTACCCACTTCTGTTCAAGGCCAGTTACCTGCTAGAGCAGGCAGATGTAACCCGTGCTCTGCTGAGTCACTGGCCACTGGAGGAGTTCCGGCTGGCTGTGCTACTGAGGCCAAACACTGACCACCCTGAAGACCTGCGTGATCGTGCCTGCAAGGCCTGCCTGGAGGCCTGTATGCAGGGCATAGCTGACCATGTGCTGAAAAGTGGGAGCAACCGCCTTCGGGTAGCTGATTTCACCGGCATCCAGGACGTACAG
Seq A exon
GCCTTCGATGCTCCCCCAACTTGTGCCCCAGATCCAGAGGGCGAGGATCTTCTCCTTACCTCTATTGCCTGGGAGCTCAGCCAGATGAACCAGCTCACTGAGCTAAGTGTGGCTTTCTCTACACTCACTGGGAAGATCCAAACATTGCTTAG
Seq C2 exon
CCCCTTGAAGACCCCACTAAGAGTGTTGGACCTAGCCAACTGTGCCCTTAATCATGAAGACATATCCTTCTTAGCAGACTGTAACCACACTGCCCACTTGGAGGTGCTGGACCTCAGTGGACACAACCTGGTACACCTGTACCCTTCTACCTTCTTCAGGCTGCTGAGCCAGGCTGCCCAAACACTGAGAGTGCTCACCCTCGAGGAGTGCAACATCACAGACAGCCATGTTAACATGATGATTCTGGGCCTTAGCCCTTGCAGCCAGCTCCAGCAGTTCAAGTTTCTTGGAAACCCGCTCTCAGGCAGTGCTCTCCGGCGCCTTTTTGCTGCACTCTGCGAACTCCCTAGGCTTCGCCATATTGAGTTCCCAGTACCAAAGGACTGCTACCCCGAGGGTGCCATCTACCCTCAGGATGAACTGTCAGTGTCCAAATTCGACCAACAGAAATACGACGTGATTGCAGAGGATCTTCGAGCAGTACTGCTTCGAGCTAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021579_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138551=LRR_8=WD(100=31.9)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCTGATTTCACCGGCAT
R:
GTGATGTTGCACTCCTCGAGG
Band lengths:
253-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types