MmuINT0092829 @ mm10
Intron Retention
Gene
ENSMUSG00000021579 | Lrrc14b
Description
leucine rich repeat containing 14B [Source:MGI Symbol;Acc:MGI:2145269]
Coordinates
chr13:74359578-74364005:-
Coord C1 exon
chr13:74363073-74364005
Coord A exon
chr13:74361400-74363072
Coord C2 exon
chr13:74359578-74361399
Length
1673 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
ATGTTTTGCCTACCTCACAGCCC
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTTTGGGAAGAACATCGGGGACAGCGCCACTCTGACCAGGGGCACGATGAGGTCGCTTCGTTTCATTTCTGCTGAAGCGTTAGTGTCCCACTCCCAGCTGGTCCAGGAGAACCTGGACAATATAGCCTACAACCTCTACCCACTTCTGTTCAAGGCCAGTTACCTGCTAGAGCAGGCAGATGTAACCCGTGCTCTGCTGAGTCACTGGCCACTGGAGGAGTTCCGGCTGGCTGTGCTACTGAGGCCAAACACTGACCACCCTGAAGACCTGCGTGATCGTGCCTGCAAGGCCTGCCTGGAGGCCTGTATGCAGGGCATAGCTGACCATGTGCTGAAAAGTGGGAGCAACCGCCTTCGGGTAGCTGATTTCACCGGCATCCAGGACGTACAGGTGCAGCAATGTCCTTGTGGGAGGGCACTAGGAAGGTGGGGCCGTACCAAGGTGCTGGCCAGGACCTGCTGCCAGCTCCAAGGACAGCCCTGTTCAGCTGGGCACCCCATTGAAGTCTTTGCTGACCTCTTTGTCACAGAAGGCAACTTTGACATGGTGGTGCAGGCCCTGAAGCCATTAGGCCCAGCACCTCTGCAGGTCTGTTGCCCTTCACTCCGGGCAGACAGCCTGAGCCCTGGGCAGCTCCTACAAGTTCTTGGCCTGGCTGGGCCAGGCAACCTTAGAAAGTTGGAGGTAGTACACAATGTCCGGCTGCATGCTGGCCATGTGCAGCAGCTGCTGACCCAGGTGGGCTTCCCTCAGCTGACCTCACTCACCTTGCCCACCAAGGCCTTCGATGCTCCCCCAACTTGTGCCCCAGATCCAGAGGGCGAGGATCTTCTCCTTACCTCTATTGCCTGGGAGCTCAGCCAGATGAACCAGCTCACTGAGCTAAGTGTGGCTTTCTCTACACTCACTGGGAAGATCCAAACATTGCTTAG
Seq A exon
GTAAGTCTCAGAGAATTGGGTACAGGGCCTGGTAAAGTATTCTGGAGTCACTGAGGAACAGGGATAGGATCTGTTTACACAATGTTCTCTGGGAATGTGTTGGTCAGACCAGCAAGAGTTAAGAGCCATTAGGAAAGAATCAGAACACTGATCCAGTTTGGAAGACGCCTTTCAATGAACAAAAACTCGGCCATGGGGCTTGCCCATAATCCCAGTGCTTGAGGTCAGCTACAAAGAGAGGCTTATTTCAACAAACAAAAACAAACACAAGAGCTGAGGGTATAGGGTAGTTGAGTGATAAAGCACTAGCAGGGTTGTGCTGGAATGGCAGCTCTCATCCAGACAGACCACACCAGGCCAATGCAGTTCCATGTGGCAGAGGTTTATTGGGGTGGGTTGGGGTGGACAGAGACAAAGGGAGAAAAGAGAGAAAGAAGGGCCAAAGGTCAGGAAGGGTCTACCTTTTATTTAGGCTCACAGGTAAGGGTGGGAAATGGACTCTGGGAATGTGATTGCCATGGTAACAGATGTGCATGTCTCTGTTCCCTATGGGTGACATCACTGGGTTCAGAGGCAATCTGGCAAGCTGGTTCCTGATACCAACGAGCAGGACCCTAGTTTTAGTTCTCAGCATCAGAGAGGGAGGGAGGAGGAGGTAGAAGGAAGAAGACATGAGAAAGAGGAACTAGAAAGTAAACAACACAAAAGTCACAACCAGATCTTCTACTGACTAGTGTTGTATAACGAATTACCCAATATTTAGTGTCTTAAAACATTTTCCCAGGATAGGAATGGGAAGGTAGTTTAGCATAGTGAGAACCTTGTCAGCAGTTTAGCTGGATTGCCACACCTGAAATCCTGGTACTGCAATCTCCTCCTTAGCAACTGTACTATGAAGAAGGGTAGTAGGGTAGCTGCCAGTTAGTTCTGAAGTCAGGGTAGTTTCATGTGGAGAGTACTGTCCCAATAATAGGTTATCATTTATGGGCAAGTAGTGGAGAGGCAGCAAGAACAAGTTAGTAAGTAGGGACAGAACAAGACCCCACCACATACTGTCTTGTTTAATAAGGGCAGTGAAGGGTGTGTTCCCAGAAAGGTCCAGGGTGCCAGAAAATGTATATTCTCATGACCCCTGGGTGGAGAAGTTATTTCAGACACACCTCCCCACAGAGGATACTGGCTGAATAGTGAATTCAGGGTTATGGAGGCCACATTCAGGCTGCTGGACTTCCTTCTCAGCCCTGAAAACCATTACTGGTCCTATTGTCATCAGAGTGGCAGCACTCTCTTTCAAGCTAATTCTATCCTTTGCTGTTCTCACAGTCAATATTCTGATGGTTCTGAGATCAGGTGCATAACTTCTCTACCTAACTTGAAAGGTGGTGTTGGTCCATTTTAGGTTCAATTACTGACTGCTCAACAGGCCCAGCAGCTGTAGACTTCTAGAAGAAATGTGACTTTCACATTTCACCAATTATTTTGACTCTTTAAATTTTGCTTAAAAATATCATTCTTAACTCATATGCTAACGTGAAATGAAGTCAGCTGGAGTTTCTGGCAGGCTGCAGTCAGTGATCTCTAAGATAGAAAAGTGGTTAGATTATTCACCTCCACCAAAACTCCAGCTCACCTGAGACCCTCATAACATTTGTGATGTTTTGCCTACCTCACAG
Seq C2 exon
CCCCTTGAAGACCCCACTAAGAGTGTTGGACCTAGCCAACTGTGCCCTTAATCATGAAGACATATCCTTCTTAGCAGACTGTAACCACACTGCCCACTTGGAGGTGCTGGACCTCAGTGGACACAACCTGGTACACCTGTACCCTTCTACCTTCTTCAGGCTGCTGAGCCAGGCTGCCCAAACACTGAGAGTGCTCACCCTCGAGGAGTGCAACATCACAGACAGCCATGTTAACATGATGATTCTGGGCCTTAGCCCTTGCAGCCAGCTCCAGCAGTTCAAGTTTCTTGGAAACCCGCTCTCAGGCAGTGCTCTCCGGCGCCTTTTTGCTGCACTCTGCGAACTCCCTAGGCTTCGCCATATTGAGTTCCCAGTACCAAAGGACTGCTACCCCGAGGGTGCCATCTACCCTCAGGATGAACTGTCAGTGTCCAAATTCGACCAACAGAAATACGACGTGATTGCAGAGGATCTTCGAGCAGTACTGCTTCGAGCTAACCGGGAGGACATCCAGGTCTCCACCCCACTTTTTGGAAGTTTTGATCCAGACATTCATGAAACCAGCAATGAACTTGGTACTTTTTTGCTGCAAGCTTTCAAAACTGCTTTGGAAAACTTTTCCAGAGCACTAGAACAAATGGAGTAGGTCCTGGAATCGTGCTGTAAGAGGCTGTGCATTTCTAGTGCCCTGAGGTCAGTCCTGGACCAGATGATCAGGCTCAACCATTTGTCACCAGCAGCAACACTGCCACAAGATTTCCTCAGAGAAAACTGCAGGCGTACTCGTTACGTGCTCTAAGAGGAAGCCAGATACATAAATGAGACATGAGGTGCTCCTGTGTGTTAGCACAGCAAGATCTTAAAGCAGAGGAGAAGCCACCTTACACCAAGACAGAAGGTGGAGAATGTGGTCACCAGGGCAGGATGTAGTGGGAACAGGGTCAACTACTTAGCTCTGATGCTGTGAGGGGAAGAAATGAGAAAATTCACCACATGTATATCAAAATGTATAGAAACAGCAGCTCATAAAAAATAGACACTGAGCCGGACGTGGTCGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGGGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAGGAAAACCAAAAACAAAAAACAAACAAACAAAAAAAAGACATTGAAAATAAAAATGAACCAGACCCCTGAGCTAGCAGTTTAGTTATGTTCTATCTGCTGTGTATTTTACCAGATGACATCGGCTACACAGAAATGTGGGGGATGGGGTGATGATCAGTTTTCTATCGGTGGCTGTTTGGGCTTTGTTTCCACCTGCAGCAGATTTTTATCGTCTTTTGGTGACTGAGGACATCTAGTCACTGAAATATGCCCAGTGTTTCTTGGCATACTCTGATCTGCTTTCTGCTTAGAGTTCAGACTGTAAGACAGGCATGTCTAACCTGAACAGTCTATGCAGTCACATGTGACAGAGGATAGCTATGAACGTAGCGCATTACAAAGTTGGAAACTTACTGAAGACACTGAGATGATTTTTTTGAAACTCGTGACTCAGTTTTCAAGAATGAGCTTTGTAAATGTTAACATATCTATAAGGCACACGAATCACTGCTCCTCCTCAGAATGGCTGAGGCCTGGCCCTTTGCAACTCCTTTGAGAAACAAATCATCACGTAAGAAAGACTCGTTTAGACTTTATTTCCAGTATTTGCTTTGCCAAAGTACTACTGTAATGAAATGCTAATAAAATAGGAGTGTGGCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021579:ENSMUST00000022064:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=31.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTGTGCCCCAGATCCAG
R:
GTGATGTTGCACTCCTCGAGG
Band lengths:
355-2028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types