HsaINT0096639 @ hg38
Intron Retention
Gene
ENSG00000185028 | LRRC14B
Description
leucine rich repeat containing 14B [Source:HGNC Symbol;Acc:HGNC:37268]
Coordinates
chr5:191511-195353:+
Coord C1 exon
chr5:191511-192437
Coord A exon
chr5:192438-194707
Coord C2 exon
chr5:194708-195353
Length
2270 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTTCCCCCGTGTCCTGCAGCCC
3' ss Score
10.31
Exon sequences
Seq C1 exon
GTCGTGGGGAGCGGTCCTGTCTCGGGCCATGGACACAATGAGGTCACTCCGCTTCATTTCTGCAGAAGCTCTGGTGTCCCACCCCCAGGTGGCCCGGCAGAGCCTGGACAGCGTGGCCCACAACCTCTACCCACTCCTGTTCAAAGCCAGCTACCTGCTGGAGCAGGCGGAGGTGACGCGCGCGGTGCTGGGGCGCTGGCCCCTGGAGGAGTTCCGGCTGGGAGCGCTGCTGGGTCCTGGTGCCGACCACCCCCAGGACCTGCGCGACAGAACCTGCAGGGCCTGCCTGGAGGCGCTGGTGCGCGGCCTCGCGGACCACGTGCTGCAGGACCGGAGCCGCCGGCGGCTGCGGGTGGCTGACCTCACGGGCATCCGAGATGTGCAGGTGCAGCGGTGCCCGTGCGGGAGGGCGCTGGGCAGGTGGGGCCGCACCCAGCTGCTGGCCAGGACCTGCTGTGAGCTGCAGGCAGAGCCCCTCGCAGCCGGGCGCCCCGTCGAGGTCCTCGCCGACCTCTTCGTCACTGAGGGCAACTTCGAGGCGGTGGTGCAGGCTCTGAGGCCAGCGGGCCCGGCCCCTCTGCGGGTGCACTGCCCCTCGTTCCGGGCGGACAGCCTGAGCCCCAGCCAGCTCCTGCACGTGCTGCGTCTGGCTGGCCCGGGTGCCCTGCGCAAGCTGGAGGTGGTGCACAACGTGCGGCTGCATGCGGGCCACGTGCAGCAGCTTCTGGCCCAGGTGGGCTTCCCCCGGCTGGCCTCGCTCACCCTGCCCACCAAGGCCTTTGATGCACCCCCCACCTACGCCTCCACTCCCGACGGCGAGGACCCCCTCCTCGCCTCCATCGCCCGGGAGCTCAGCAAGATGGCGCAGCTCACTGAGCTCAGTGTGGCCTTCTCCACGCTGACCGGGAAGATCCCGACGCTGCTTGG
Seq A exon
GTGAGTCTTGGGGAGGGGACTGAGGGCGGGCTGGTGGCTGCAGAGGCAAGGAGAGATCGTCCAGGGGCCTGCTCATGTCCAAGGCCATGAGGCTACACGGCCTCCAGCCTCTCACTCCGGGTGTGGCCACAGCCACAGGACAGCGGCCCCGCCAAGGGGCAAGAGCACCGAAAGTCAGAGCCACCAGGAAAGAAGCGGGCTGCCATGTGTGACTTAGGGATGTGGAGAGAATGCCAGTTAAAAAAAGAGAATACGGAAATTACCAAACAGACGAAACAGAAGTGCCTACGTGGTGTGAGGAGTTGTCTATTGTTGATGAACGACTCACCCCAACACTTGGGGGCTTCAAACAGCAAACACGATTTCAGCTCAGAAATCTGAGCCTGTCGGTGCCTTTGGCTCAGGGCTGCTGTTGGCCAAGGGTGCCATCTCATCCGAAGGCCTGACAGGGCGGGATCCTCCCAGTCTCCCTCGAGGGAGGCCTGGGCTCCATGCTGCATGGACCTCCCCATGGTGGGACAGGAGGCTTATGCAGGATCCTCTCAGCAGATCTGCGTGAAGGAGGCAGAGAGGGCAGCAGCTAGGAAGGGGCCAGGCCAAGGCAGCCTCAGGCAGTGGTGAGGGGGATGCCCGGCGGTGGGTCCAAGGGGGGTGCCCAGCAGTGGATCCTGGAGGGGGAGTGCCTAGCGGTGGGTCCAAGGGGGGTGCCCAGTGATGGGTCCTGGGGAACGGGGTGCCTGGCAATGGGTGCTGGGAGGGAGCCTGGTGGTGGGTCCTGAAGGAGGGGCAGCTGGCGGTGGGTATTGGGGTCACCGGGTGATGGGTCCTGGTGGGGCAACCTAGCGGTGGGTCCGGGGGGCACCCAGTTTTGGGTCCTGGGGGTGGGACCTGGCAGTGGGTCTAGGGGGAAGGGGTGCCTGGTAGGTACTGGGGAAGCACCTAGAGGTGGGTCCTCAGGTGCTGGGGGGTGCCTGGCGGTGGGTTCTGGGGGCTGGGGGCACATGGCAGTGGGTCCTGGTGGGGCGTTTGGCAGTGGGTTTTGGGGAGAAGTGCCTGGCGGTGGTAGGGGTGCCTGGTGGTGGGTCCTGAAGTGGGGGCACCTGGTGGTGAGTCCTGGGGTGGGGGGTGGCTGGCTGTGGGTCCTGGGGTGGCACCAGGCAGTAGATCCTGGTGGGGGATGCCTGGCGGTGGGTCCTGAAGGATGGGGGTGCCCTGCGGTGGGTCCTGAGGGATAGAGGTGCCCTGCGGTGGGACCTTGGGCAGGGGGCATGCCTGGCGTGGTTTCTCAGGTGGGACAGGGGCACCTGGCAGTGGTCCCAGTCCTGGGTGGGGAGGGACATGTCCTGGGCGGGACATGCAGGTGGGTGCAGGTGCAGGTGGGTGAAGAGTGAGGCAGCCTCCTAAGGAGAGGGTTGGGATGGGGCAGACCCCAGCTGTGTCCCCCGGCTCAGCGAGGACAGTGAGGCCATGTCCCGATGCAGTTCTGCTCTGGAGATCTCCCTTAGCTCAGAACCAGAGTAGGTCTCACTCCAACTGCCCCTGTATTAGAGCTAGGCTGCCCTACACCAACCAAGTCAGAATATGGGATGTGGGGCAAGTTGGGGGGTCTTTAGGGTTCCCAGGTGAGTCAAAGGCTGTACTGGAAGCCTCCATGGCCCTTCCCAGCTCTGAAACCATGCGGGATTCATCTTTGTCAGAGTGGAGCGGCACTGTCCTGTGGTCTCACTGCCCCCCGCCGTCTGCTTTCTGAGCAGACATTCTGTCCTGTGGTCTCACTGCCCCCCGCCGTCTGCTTTCTGAGCTGACATTCTGTCCTGTGGTCTCACTGCCCCACCCCGTCCACTTTCTGAGTGGACGTTCTCGTGGTCACATGCATCACTTTTCTCAGACAACACAAAAGCAGCTGTTGACAAAACAAACTTACCATTTAGGTGCTGAGGACAAAAGCCAGACCTCTGGGTATAGCTGACTTCACCACGTGGCGGCCGGCAGTCATGGCCAACACTAAGCGAATGCACGTGGTTGTGCTCTGGTAAAATGTTATTTATGGACACCGAGTTTGAATATCATGTAACTTTTCACGTTTCACAAACTATTATATAAATATAACAACCACTCCTAGCTCATAGGCTGTATGAAATTAGGCGGTGGTTGGACGTGACTGTGTGTTGACCCCATGATGGACAAATGGGTTGTTCCCATTCGCCTGAGCCCTCGGCTCCTTCCTGGGACCCTCCTCTCACCTGTGCTCTTTCCCCCGTGTCCTGCAG
Seq C2 exon
CCCCCTACAGACCCCGCTGCGAGTACTGGACCTGGCCAACTGTGCCCTGAACCACACGGACATGGCCTTCTTGGCAGACTGTGCCCACGCTGCCCACCTGGAGGTGCTGGACCTCAGTGGACACAACCTGGTCAGCCTGTACCCCTCGACCTTCTTCAGGCTGCTCAGCCAGGCTTCCCGGACGCTGAGGATCCTGACACTGGAGGAGTGTGGCATCGTAGACAGCCACGTTGGCATGCTGATCCTGGGCCTGAGCCCCTGCCACCGGCTGCGCCAGCTCAAGTTCCTCGGGAACCCGCTGTCGGCCCGCGCCCTCCGGCGCCTCTTCACCGCACTCTGTGAGCTCCCCGAGCTGCGCTGCATTGAGTTCCCGGTGCCCAAGGACTGCTACCCCGAGGGTGCCGCCTACCCACAGGACGAGCTGGCCATGTCCAAGTTCAACCAGCAGAAATACGACGAGATCGCCGAGGAGCTGCGTGCCGTGCTGCTGCGGGCTGACCGAGAGGACATCCAAGTCTCCACACCTCTCTTTGGAAGTTTTGACCCAGACATTCAAGAAACAAGCAATGAGCTTGGTGCTTTCTTGCTGCAAGCTTTCAAAACTGCTCTAGAAAACTTCTCCAGAGCACTCAAACAAATAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185028:ENST00000328278:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development