BtaINT0087115 @ bosTau6
Intron Retention
Gene
ENSBTAG00000045954 | LRRC14B
Description
leucine rich repeat containing 14B [Source:HGNC Symbol;Acc:HGNC:37268]
Coordinates
chr20:71984463-71989365:-
Coord C1 exon
chr20:71988476-71989365
Coord A exon
chr20:71985109-71988475
Coord C2 exon
chr20:71984463-71985108
Length
3367 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATTTCCCACCTTGCCCGCAGCCC
3' ss Score
9.92
Exon sequences
Seq C1 exon
ATGCAGTCGCTGCGCTTCATCTCCGCGGAGGCCCTGGTGTCCCACCCTCCGGGGGCCCAGCAGAGCCTGGACGCCGTGGCCCACAATCTATACCCGCTGCTCTTCAAAGCCAGCTACCTGCTGGAGCAGTCCGCCGTGATCCGCCTTCTGCTCGAGCGCTGGCCCCTGGAGGAGTTCCGGCTGGGCCCTCTGCTGGGTCCGAGCGCGGACCACGCTGGGGACCTGCGGGACCGGGCCTGCCGGGCCTGCCTGGAGGCCTGCGTACGCGGCCTGGCCGATCACGTGCTTCAGGGCGGGGGCCGCCGGCGGCTGCGGGTGGCTGACCTCACGGGCATCCGAGACGTACAGGTGCAGAGGTGCCCCTGCGGGCGGGCGCTGGGCAGGTGGGGCCGGACGGAGCTGCTGGCCAGGACCTGCTGCGAGCTGCAGAAGCAGCCCTGCGCCACCCGGCGCCCCATCGAGGTCCTGGCCGACGTCTTCGTCACCGCGGGCAACTTTGAGGTGGTGGCGCGCGCCCTGGGGCCGTCGGGCCCCGGCTCTCTGCGCGTGCGCTGCCTCTCGCTGCGGGCCGACAGCCTGGACCCAGGGCAGCTGCTGCACGTGCTGCGCCTGGCAGGGCCCCGAGAGCTGCGCCGGCTGGAAGTGGTGCACAACGTGCGTCTGCACGCGGGCCACGTGCAGCAGCTGCTGGCCCAGGGGGGCTTCCCGCGGCTGGTCTCTCTCACCCTGCCTGCCAAGGCCTTTGATGCGCCCCCCGCCAGCACCCCTGCCTCTGACGGCGAGGAGCCCCTGCTCGCCTCCATCGCCTGGGCGCTCAGCAGGATGACGCAGCTCACGGAGCTGCACATGGCCTTCTCCACGCTGACCGGGAAGCTGCAGACACTGCTTGG
Seq A exon
GTGAGTCTGGGGTGACCGGAAGGATGGGGCGGGGGTGGGGGGCATCTGCCCTCAGCCCCTCAGCCCAGGTCAGGGCGGCCCAGGGCTGTGCACAGACCTGGTTACTTACAAGGCACAAGGCCCGGTCCCTGTGGGTTTTGCCCAGCCCAGAGCAGCCAGAGAGGACCCATGGGGAGGGAGGAAGCCCACCTGGGACTGGCCGTTGGGGGCCACCTGGGAGCCCCACGCCTCAAAGGAGACTCTCCAGTTAGTAAGAAAAAGACAAGAGTCCTGATTAGCAAGCAGGCAACATAGAAGTAACTCCATCACAGTGTATTAATTACCTTTTGGTGTAACAAAGCACCCCAGTGCTGGGGCTCCTGTGGGCAAGACAGGAGCCCTGTGGGGGCAGCTGTGGTCTCTCCTGAAGGCCTGTCCGGCGGGAAAGTGGAATGATCCACTTCCATGCTCATTTTCATGGCTGTCAGTGAAAAAAAGGGAAAAGGGAAAGTCGCTCAGTCGTGTCCGACTCTTTGCAACCCATGGACTCTATGGAATCCTCCAGGGTTCCAGTCCATGGAATTCTCCAGGCCAGAATACTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCGAATCCAGGTCTCCTGCATTGCAAGCGGATTCTTTACCAGCTGAGCCACAAGAAAAGCCCAAGAATACTGGAGTGGGTAACCCTAACCCTAATCCTAACCCTTCTCCAGGGGATCTTCCCAACTCAGGAATCAAAATGGGGTCTCCCGCATTGCAGGAGGATTCTTTACCATCTGAGCTATAGGAGACCTCAACTCCTTGGCTCATGGACCCCTCCGCAAGCCCTCTGGCTCCTGTAACCTTCCCTGCAGAGTACGACGCCGATGCTGCCACTCACGGTGTGGTGAGGGCCGGTCACCAGGCCAGGGGAGGGCACCACCGAGGGTCGCCACCTTGACAGCCACCAGCTGTGAATATACTTACAAAAATTATGGAAAATAACTTCTCGTTTCTTGAGCCAATGAGTGTGAGGACGTCTTCTCTGGTTTAGGGAGCCGTGGCTTACCAGAATTTTTCCTTTAAGCAGCAGCTGGCCAGGGCCTGCATGGCCTCTATTCCCTGAGGCACCTGGGCTCCCCGCCCCATCCCCCACCCCGGCTCCTCAACCAGGTAGTTGCCCAGCTCAGGAAAGGCGGGCCTTGAACCCACACACAAACACGACTGCCGTGTGGCAGCGCCCTGGGACCCTCAGGACAATCCTGCCCTTGTGGTGCCTGGGGAAGCACGTTCACAACCAGACAACCCGGCACAAACCCGCGGGGCCATCTTGTTGGCCCCGCCCTGACATCACCTGTCTCCCCTGACCCTTTGCTCTGCACACTCGCTGAGAGCCCGTCCAAAGCTCCAGAAGGCCCAGATGTGTGGTGTGTCAGGCCTAAGTGGGAGGGAGTAGACGGTTGTGTAGTCAGGGAAGGTCGGTTTCCAAGGTGACCTTTGAGCAGAGACCTGGCCCCTGAGTGAGTGGAGGGCCTGGGGAGAGTGAACCGGCAGGAACCCTGCAGGTCAAGGGCCTGAGCTGGGGCTGAGGCCGGCTCTGGGAGACACAGAGGGGGCGGCCTGGGCTGGGGGCTGAAGGACAGGTGAGGAAGGGAGCAGGGGGGAAGAACGGGGGTAGGGAAGAGCCAGGTCAAGCCCTGGAGGCTCTGAGCCCGACTTGGGGTGATCAGCCCCAACAGGACAAGGGTTGCCCTGGCTCCCTTGGCTCACACAGCAAACCCAGGTGGAGAGATGGGAAGACCGGCAGACAGGGCAGTCTTCCCACGGCTCCCAGGTTGGTGACTCCCTGGGAAGACTCACTGCCGAGATGCAGATGGCTGTGATGACGGGCACGCACCTGTCTGCCTCCTTTCCACTTAGGCCTGACACATGGCACACCTGCGCCTTCTGGGGCTTTGGACAGGCTCTCAGCGACCAGCTGACTGAAGCCCGAGTGTGCAGAGCTTCGGGAAGACAGGTGATGTCAGGGCGGAGCCAACGAGACGGCCCTGCGGGCTTGTGCCGGGTCGTCTGGTTGTGAGTGCGCTTCCCCAGGCACCACAAATGCAGGACTGTCCCAGGGTGCCGCCACACAGCAGTCATGTTTGTGTGTGGGCTCGGGGCCCGCCTTTCCAGACACATGGGGAGCACATTGGAGACCCAGGCCCAGGGGTTTCATTGGGGGCTTGTTGGGAGGGCACCTCAGCCTGGCATGCACAGAGATTTCAGATCCCAGAAGGAGGCCTGTGTCAGCAGGCACCACATTGCTTGTGCGGACAGCTCAGGCCAGGGGCCCCTTATCAGCTGAGTGGGGGGCCTTTCCCAAATCCAAGCTCCCAGACACACGTTGGCAGTCAGGCCTGCCCTTTGACCCTTTTCCACACAAGAGGCCCCTTAAGGGTTGGGGCGGGGCAGCTGGGGAGAGGGCTCCTTATGGATGGATGTGGGCATGAGAGAGATGTCGGTGGAAACACTCCGCACAGCTCAGGGCCTGAGCCACAGCCTGCAGAGCCGTGATAGGGGGACAGCAGGCACTCTGCTGTGTCGGCAGCTGGAAGACCACAGGAGCTCTGGGCCCAGAGTACAGATGTAGGGTGAGGTGGTAGAGGAGCCCCAGCGGGCAGGTGGAGAGTGGACCCCCACGTCCTGACACTCGGTGCTCAGCTCGGTGACCCCAGACCCAGGCCAGGAATCCCCAGGGCGGGTGTGGGTCTGTGAGAGCCACTGAGCAGGGCAAGGACTCCTACTCAGAGCACAGGAGGGTCTTCAGGTCCCTGGCAAGCTAAGAATGGACCCCTCCCTGCCCTAAAAGCCTGTGCGCTCCAGCCCTTCATTCGGAGCCAAGCCAGGTACCAATTCACAGGCACTTCACAGCCCCACAACAAGCTTGTGAACACACAGAGCCCTGTTGACAATAGAGATTGATCACTTTGGTGGCTGAGGACAAAGGCCAGGCCTGTCTTCAGGTAAAGTCGAGCCTCTGCTGCAGGTGGCTACACTGCCTGCTGCCTCAGCCCTTCCGTTGCACCCGGGCAGCTGCAGACAGGAGGTACAGGAAGGTCTTGCCGTGTTCAGATTATACTTGATTTACGGGCACTGAAACTTGAATTTCATATCATTTTCACATGTCACAAAACATTCTCATTTTGATTTGTTCAACTGCTTAAAAATGAAAAACAGTCCTGCTCTCAGGCTGAGTGGAGTCCCGGGTAGGTGGGTGCGGCTCTGAGCCGCAGTCTGCTGTGCCTGAAACAGGATTCACCCCAAGGCCCCAGAGCACCCCGGGGCCTGCTCTCAGCCGCTATTTCCCACCTTGCCCGCAG
Seq C2 exon
CCCCCTCCGGACGCCGCTGAGAGTGCTGGACGTGGGCAACTGCGCCCTGAACCACGAAGACATGACCTTCTTGGCGAACTGCATCCACGCGGCCCACCTGGAGGTGCTGGACCTCAGCGGGCACTGCCTGGTGGACCTGTTCCCGGCCACCTTTCACCGGCTGCTGGGCCAGGCCGCCCCCACGCTGAGGGCCCTGACCCTGGAGGAATGCGGCCTCGAGGACCGGCACGTGGGCGCACTGAGCCTGGCGCTGGGCACCTGCCGCCGGCTGCGGGAGCTGCGCTTCCTGGGGAACCCGCTGTCGGGCCGCGCGCTCCGGCGCCTCTTCGCCGCGCTCTGCGAGCTCCCCCGGCTGCGGTGCGTGGAGTTCCCAGTGCCCCGGGACTGCTACCCCGAGGGCAGCGCCTACCCCCAGGACGAGCTGGCCATGTCCAAGTTCGACCAGCAGAAATACGACGCCATTGCGGCAGACCTGCGCGCGGTGCTGCTGCGCGCCGGCCGGGACGACATCCAAGTCTCCACACCCCTCTTCGGGAGTTTCGACCCGGACATTCAGGAAACCAGCAATGAACTCGGAGCTTTCTTGCTGCAAGCCTTCAAAACCGCTCTAGAAAACTTCTCCAGAGTGCTGAAGCAGATGGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045954:ENSBTAT00000064557:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=31.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]