HsaINT0096639 @ hg19
Intron Retention
Gene
ENSG00000185028 | LRRC14B
Description
leucine rich repeat containing 14B [Source:HGNC Symbol;Acc:37268]
Coordinates
chr5:191626-195468:+
Coord C1 exon
chr5:191626-192552
Coord A exon
chr5:192553-194822
Coord C2 exon
chr5:194823-195468
Length
2270 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTTCCCCCGTGTCCTGCAGCCC
3' ss Score
10.31
Exon sequences
Seq C1 exon
GTCGTGGGGAGCGGTCCTGTCTCGGGCCATGGACACAATGAGGTCACTCCGCTTCATTTCTGCAGAAGCTCTGGTGTCCCACCCCCAGGTGGCCCGGCAGAGCCTGGACAGCGTGGCCCACAACCTCTACCCACTCCTGTTCAAAGCCAGCTACCTGCTGGAGCAGGCGGAGGTGACGCGCGCGGTGCTGGGGCGCTGGCCCCTGGAGGAGTTCCGGCTGGGAGCGCTGCTGGGTCCTGGTGCCGACCACCCCCAGGACCTGCGCGACAGAACCTGCAGGGCCTGCCTGGAGGCGCTGGTGCGCGGCCTCGCGGACCACGTGCTGCAGGACCGGAGCCGCCGGCGGCTGCGGGTGGCTGACCTCACGGGCATCCGAGATGTGCAGGTGCAGCGGTGCCCGTGCGGGAGGGCGCTGGGCAGGTGGGGCCGCACCCAGCTGCTGGCCAGGACCTGCTGTGAGCTGCAGGCAGAGCCCCTCGCAGCCGGGCGCCCCGTCGAGGTCCTCGCCGACCTCTTCGTCACTGAGGGCAACTTCGAGGCGGTGGTGCAGGCTCTGAGGCCAGCGGGCCCGGCCCCTCTGCGGGTGCACTGCCCCTCGTTCCGGGCGGACAGCCTGAGCCCCAGCCAGCTCCTGCACGTGCTGCGTCTGGCTGGCCCGGGTGCCCTGCGCAAGCTGGAGGTGGTGCACAACGTGCGGCTGCATGCGGGCCACGTGCAGCAGCTTCTGGCCCAGGTGGGCTTCCCCCGGCTGGCCTCGCTCACCCTGCCCACCAAGGCCTTTGATGCACCCCCCACCTACGCCTCCACTCCCGACGGCGAGGACCCCCTCCTCGCCTCCATCGCCCGGGAGCTCAGCAAGATGGCGCAGCTCACTGAGCTCAGTGTGGCCTTCTCCACGCTGACCGGGAAGATCCCGACGCTGCTTGG
Seq A exon
GTGAGTCTTGGGGAGGGGACTGAGGGCGGGCTGGTGGCTGCAGAGGCAAGGAGAGATCGTCCAGGGGCCTGCTCATGTCCAAGGCCATGAGGCTACACGGCCTCCAGCCTCTCACTCCGGGTGTGGCCACAGCCACAGGACAGCGGCCCCGCCAAGGGGCAAGAGCACCGAAAGTCAGAGCCACCAGGAAAGAAGCGGGCTGCCATGTGTGACTTAGGGATGTGGAGAGAATGCCAGTTAAAAAAAGAGAATACGGAAATTACCAAACAGACGAAACAGAAGTGCCTACGTGGTGTGAGGAGTTGTCTATTGTTGATGAACGACTCACCCCAACACTTGGGGGCTTCAAACAGCAAACACGATTTCAGCTCAGAAATCTGAGCCTGTCGGTGCCTTTGGCTCAGGGCTGCTGTTGGCCAAGGGTGCCATCTCATCCGAAGGCCTGACAGGGCGGGATCCTCCCAGTCTCCCTCGAGGGAGGCCTGGGCTCCATGCTGCATGGACCTCCCCATGGTGGGACAGGAGGCTTATGCAGGATCCTCTCAGCAGATCTGCGTGAAGGAGGCAGAGAGGGCAGCAGCTAGGAAGGGGCCAGGCCAAGGCAGCCTCAGGCAGTGGTGAGGGGGATGCCCGGCGGTGGGTCCAAGGGGGGTGCCCAGCAGTGGATCCTGGAGGGGGAGTGCCTAGCGGTGGGTCCAAGGGGGGTGCCCAGTGATGGGTCCTGGGGAACGGGGTGCCTGGCAATGGGTGCTGGGAGGGAGCCTGGTGGTGGGTCCTGAAGGAGGGGCAGCTGGCGGTGGGTATTGGGGTCACCGGGTGATGGGTCCTGGTGGGGCAACCTAGCGGTGGGTCCGGGGGGCACCCAGTTTTGGGTCCTGGGGGTGGGACCTGGCAGTGGGTCTAGGGGGAAGGGGTGCCTGGTAGGTACTGGGGAAGCACCTAGAGGTGGGTCCTCAGGTGCTGGGGGGTGCCTGGCGGTGGGTTCTGGGGGCTGGGGGCACATGGCAGTGGGTCCTGGTGGGGCGTTTGGCAGTGGGTTTTGGGGAGAAGTGCCTGGCGGTGGTAGGGGTGCCTGGTGGTGGGTCCTGAAGTGGGGGCACCTGGTGGTGAGTCCTGGGGTGGGGGGTGGCTGGCTGTGGGTCCTGGGGTGGCACCAGGCAGTAGATCCTGGTGGGGGATGCCTGGCGGTGGGTCCTGAAGGATGGGGGTGCCCTGCGGTGGGTCCTGAGGGATAGAGGTGCCCTGCGGTGGGACCTTGGGCAGGGGGCATGCCTGGCGTGGTTTCTCAGGTGGGACAGGGGCACCTGGCAGTGGTCCCAGTCCTGGGTGGGGAGGGACATGTCCTGGGCGGGACATGCAGGTGGGTGCAGGTGCAGGTGGGTGAAGAGTGAGGCAGCCTCCTAAGGAGAGGGTTGGGATGGGGCAGACCCCAGCTGTGTCCCCCGGCTCAGCGAGGACAGTGAGGCCATGTCCCGATGCAGTTCTGCTCTGGAGATCTCCCTTAGCTCAGAACCAGAGTAGGTCTCACTCCAACTGCCCCTGTATTAGAGCTAGGCTGCCCTACACCAACCAAGTCAGAATATGGGATGTGGGGCAAGTTGGGGGGTCTTTAGGGTTCCCAGGTGAGTCAAAGGCTGTACTGGAAGCCTCCATGGCCCTTCCCAGCTCTGAAACCATGCGGGATTCATCTTTGTCAGAGTGGAGCGGCACTGTCCTGTGGTCTCACTGCCCCCCGCCGTCTGCTTTCTGAGCAGACATTCTGTCCTGTGGTCTCACTGCCCCCCGCCGTCTGCTTTCTGAGCTGACATTCTGTCCTGTGGTCTCACTGCCCCACCCCGTCCACTTTCTGAGTGGACGTTCTCGTGGTCACATGCATCACTTTTCTCAGACAACACAAAAGCAGCTGTTGACAAAACAAACTTACCATTTAGGTGCTGAGGACAAAAGCCAGACCTCTGGGTATAGCTGACTTCACCACGTGGCGGCCGGCAGTCATGGCCAACACTAAGCGAATGCACGTGGTTGTGCTCTGGTAAAATGTTATTTATGGACACCGAGTTTGAATATCATGTAACTTTTCACGTTTCACAAACTATTATATAAATATAACAACCACTCCTAGCTCATAGGCTGTATGAAATTAGGCGGTGGTTGGACGTGACTGTGTGTTGACCCCATGATGGACAAATGGGTTGTTCCCATTCGCCTGAGCCCTCGGCTCCTTCCTGGGACCCTCCTCTCACCTGTGCTCTTTCCCCCGTGTCCTGCAG
Seq C2 exon
CCCCCTACAGACCCCGCTGCGAGTACTGGACCTGGCCAACTGTGCCCTGAACCACACGGACATGGCCTTCTTGGCAGACTGTGCCCACGCTGCCCACCTGGAGGTGCTGGACCTCAGTGGACACAACCTGGTCAGCCTGTACCCCTCGACCTTCTTCAGGCTGCTCAGCCAGGCTTCCCGGACGCTGAGGATCCTGACACTGGAGGAGTGTGGCATCGTAGACAGCCACGTTGGCATGCTGATCCTGGGCCTGAGCCCCTGCCACCGGCTGCGCCAGCTCAAGTTCCTCGGGAACCCGCTGTCGGCCCGCGCCCTCCGGCGCCTCTTCACCGCACTCTGTGAGCTCCCCGAGCTGCGCTGCATTGAGTTCCCGGTGCCCAAGGACTGCTACCCCGAGGGTGCCGCCTACCCACAGGACGAGCTGGCCATGTCCAAGTTCAACCAGCAGAAATACGACGAGATCGCCGAGGAGCTGCGTGCCGTGCTGCTGCGGGCTGACCGAGAGGACATCCAAGTCTCCACACCTCTCTTTGGAAGTTTTGACCCAGACATTCAAGAAACAAGCAATGAGCTTGGTGCTTTCTTGCTGCAAGCTTTCAAAACTGCTCTAGAAAACTTCTCCAGAGCACTCAAACAAATAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185028-LRRC14B:NM_001080478:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)