GgaINT0098323 @ galGal3
Intron Retention
Gene
ENSGALG00000012519 | LRRC14B
Description
NA
Coordinates
chr2:56936827-56939758:+
Coord C1 exon
chr2:56936827-56937463
Coord A exon
chr2:56937464-56939196
Coord C2 exon
chr2:56939197-56939758
Length
1733 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CTTTCTTTTTAATTCTACAGCCC
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGCTGAGAGACTATGTGCTGAATCATCCTTCTCCCTGTGTGAAAAGGTTGAAAGTGGTGGACCTGACAGGTATAAAAGACGTTGAAGTTCAGCTTTGTGAATGTAAGAAGACAATGGGGAGGTGGGCCAGGACAAAGCTGCTCTCAAAGCTTTGTCTAGAAGTGCTGGTCCACCTGCAACAAACTCAGTGCAAGCCATGCACCTTTGAAATCAGTATTGATGTGCTAATAGACTTGTTTGTTACAGAACGCAACTATGAGCTGGTAGTGCAGGCCCTGCTGCAGAAGCGTTATTGTCCACTGAAGATCTGTTGTGTGGCATTTAGAGCTGACAACCTGGCTTTGCAGAAATTCTTCTATATCATAAAGCTCACTGATCCCTCGTCGTTGCGCAAACTGGAAGTAGTTCACAATGTTCGCTTGGAAATGGAACACTTGGAAATACTCTTCAACAGTATTCACTTCCCTCTATTGATGTCCTTGACCTTGCCAGCTCGAACATTCAATGTGCGGAGGCTCACAGCTGCAGATGAACTGGTGCTTACTACCATTGGAGAAAAAATGGGTGAAATGACACAACTGACTGAGCTCAGTCTGGCATTTTCTATACTCACAGGAAGAATACGGAAACTGCTCAG
Seq A exon
GTAACCTGGTCATCTTACTGTCAATCAAAATGTAAAGAACAGCGATTAGTGCCATCAGTAATTTGAGAACATTATAGAATAAGTGAAGTGAGAATATCTCATCTCAGAGTGTATGGGAAGCAGAAAACTAGGAAAGAGTATTTGTTGGGGAGAAGTCAATATATTGTAAAATGTAATTAGAAGAACTGCTTGTTCCTATTAGTCTTCCAGGGCCCATCTGATTAGTATGATTTGAATATGCTTTTGGCTACCAATAAAAGATAGAGATACACCTAGGTTTGTCACAATCTTGAGCTTATGCCTCAATAAGCTTGGGCTGGCCTTTGATACAAGGTCTAAGTCATACTCAAAGTGTTTTTTCAGGATTTCTAGTGACTTTTTTCCTCTAAAAATTGGACAGTAAATACAGATTTCACAGATAATTTATTTTTAGATAGCTAGAGGGATATTAAACTGATTTCAGACATTGATTTCAATTGTTCACTGTGTTTTCCAGTCTCAGAGTAGGAGACATCAGCCTTTCTCTACTGCAAATTAAGCTAACCTATGAATATTCATAATTATTTCCATAAAAGAATGGCAGTTCTTAAAAATATAACAAGTTATCAGTGATCTGTGTTCATATTTGAACTGAAAATCAAGTTGACTACATGCTTTTCAGAGCACTGAAAAAAAAAGGTAGACAAAAGTTTTGAAACAGATCATCTGGGTCTAAAATTCTTCCTATACAAAGAAGGCACTTCATTTTAATGTTGTTAAGAGATCAAACAGTGGATATTAGCACAGGAAGGCGGTGGTATGTTTCAGCAGTGACAACAGCAATGTGAAAAACAACCCATTATCCAGACATCCATGCAGATTTTTATGGTCACAGCGTTCAGGCTGTTGCTCATTATTGGTGAAAATGCATAGACAGTGGTGGTAACTATGTTGAAAAAATAATTTTTTGTAGCTGAGAATTTGCTCCATCAAATAGCATCATTGTGCTGTTGTTGTTTCTATGTATTTCCATAATAAATAGGATGCATTACTTTTGGAGCAACATGCATAAATTATGAGTTTCTAATCTTTATCCAGTTGAGATATGTGGAAGAATTCTAGTTGGGGTTCTCTACATCTGAAAGGGATCTTCTTTGATTTTCATAGGTTAAGATTATTTTATATTCAACTAAAACATTTGCACATAATCTCAGGTACACTTTTTCCAATCACATTCTTCATCAGAATTTCTGTTTGAAACTTCAGAACAAAACAGCATGTAAAACTTTTGGGCATTTAAAAACATAAAGTAAAAACAAAACTAGAAATAAATACCAAAATTTAAGAATACTGATTGGCTTTCCTCTTGGAATGAACCCTTCCTTAACAGACATGATTGAAAGCTCTTGAATGATAACAGCTTCGTGAAAGAAGTCACCAATGTTTTTATTGTAGTAATGATCTGTTATTAACTGAGCAAGTAATGGAACCTGACAACATACGAATGTTTACAAAATATACACATAGATTCTTACAAAATTAATTCCCTTTAAACCAAAACATTTCAAGTTATGAAAGGCTTGGGGAACAAAATATATTTGTCATTGTTGGCATATGCTTCATTTCTAAAAGGAGATTAAAAAAAATAATTGTGGCTGATGACTGCACTCATAATACGGACAGAAGTGTGAAATTTTGTGAAAATACTTTTTCAGTGTTTCATGGCATAAAACACTTTCTTTTTAATTCTACAG
Seq C2 exon
CCCACTAAAAACTCCGCTGAAGATGCTGGATGTTTCTAACTGCTCATTGAACCATAGTGATATGGTCTATTTAGCCAATAGCATCCATTCTTATCACTTGGAAGCACTGGACCTGAGTGGGCACAATATTCCTGAACTTTATCCATCAACATTCTTTAAGCTTCTTAGCCATTCCTCTCCAGTGCTTAGGAGTCTTATCTTGGAGGACTGTAACATCCAGGACACTCATGTCAACATGTTGATTGTAGCATTAAGCCCTTGTCAGAAACTGCAGGAGTTTAAGTTTCTTGGAAATCCATTGTCATCCCAAGCACTTAAACAGCTTTTCACATTTCTCTGTGAGTTGCCAGTGCTGAAAAATGTGGAGTTTCCAGTTCCAAAGGACTGCTACCCTACTGACATCACCTACCCAATTGATGATGCCAGTCTCTGCAGATTTGATCATCAAAAATATGACAGTATAGCAGAGGAGCTTAACTTCATTTTACTCCAAGCAAATCGGGAGGATGTGAAAACTTCAACTCCGCTCTTTGGCAGTTATGATGCAGCTGTTCAGGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012519:ENSGALT00000020449:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAACCTGGCTTTGCAGA
R:
AACATCCAGCATCTTCAGCGG
Band lengths:
344-2077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]