RnoINT0086806 @ rn6
Intron Retention
Gene
ENSRNOG00000028357 | Lrrc14b
Description
leucine rich repeat containing 14B [Source:RGD Symbol;Acc:1564978]
Coordinates
chr1:31531143-31535314:+
Coord C1 exon
chr1:31531143-31532029
Coord A exon
chr1:31532030-31533626
Coord C2 exon
chr1:31533627-31535314
Length
1597 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TGTTTTTGCCTACCTCACAGCCC
3' ss Score
7.42
Exon sequences
Seq C1 exon
ATGAGGTCGCTTCGTTTCATTTCGGCTAAAGCTTTAGCGTCCCACCCCCAGCTGGTCCAGGAGAACCTGGATAGCATAGCCTACAACCTCTACCCACTTCTGTTCAAGACCAGTTACCTGCTAGAACAGGCGGACATAACCCGTGCTCTGCTGAGTCACTGGCCGCTAGAGGAGTTCCGGCTGGCTGTGCTACTAGGGCCAAACATTGACCACCCGGAAGACCTGCGTGATCGTGCCTGCAAGGCCTGCCTGGAGGCCTGTATGCAGGGCATAGCTGACCATGTGCTGAGAAGTGGGAGCAACCGCCTTCGGGTAGCGGATTTCACCGGCATCCAGGATGTACAGGTGCAGCAATGTCCTTGTGGGAGGGCACTAGGAAGGTGGGGCCGTACCAAGGTGCTGGCCAGGATCTGCTGCCAGCTCCAAGGACAGCCCTGCACAGCTGGGCACCCCATTGAAGTCTTTGCTGACCTCTTTGTCACAGAAGGCAACTTTGACATGGTGGTGCAGGCCCTGAAGCCGTCAGGCCCAGCACCTCTGCAGGTCTGTTGCCCTTCACTCCGGGCAGACAGCCTGAGCCCTGGGCAGCTCCTACAAGTGCTTGGCCTGGCTGGGCCAGGCAAGCTTAGAAAATTGGAGGTAGTACACAATGTACGGTTGCATGCTGGCCATGTGCAGCAGCTGCTGGCCCAGGTGGGCTTCCCTCAGCTGACCTCACTCACCTTGCCCACCAAGGCGTTCGATGCTCCTCCAACCTGTGCTCCAGATCCAGAGGGTGAGGATCTCCTCCTTACCTCTATTGCCTGGGAGCTCAGCCAGATGAACCAGCTCACTGAGCTAAGTGTAGCTTTCTCTACACTGACTGGGAAGATCCAAACATTGCTTAG
Seq A exon
GTAAGTCTCAGATAGTTGGGTACAGGGTCTGGTACAGCACGCTGGAGTCACTGAGGAATAGGGATAGGATCTGTTTACACAATGTTCTCTGGGCATGTGTTGGCCAGACCAGCAAGAATTAAAAGCCATCAGGAGAGAGTCAGAACACTGAACCAAATTGGAAGATGCTTTTCAATTAACAAAACCCAGACATAGGGCTTGCCCATAATCCCAGTGCTCAGAAGGCATAGCCAGTAGCATTTTAAGTTTGAGATCAGCTACAAAGAGAGGCCCTATTTCAACAAACAGAACAAGGGCTGAGAGTATAAGCTAGTTGTGTACTAAAACAATAGCAGGACCCTAGTTTTAGTTCTCAGAGAGGGAGAGAGGAGGAAGAAGCCATAAGAGAAAGAGGAAGGAGGGAGCTAGCTAGAAAGTACAGAAGTCACCAGACCTTCTACTGACTAGTATTGTAGAATGAGTTACCCAATATTTAGTGTCTTAAATCAACGTTTTCTCAGGATAGGAATGGGAGGGTAGCTCAGCATAGTGAGAACGTTGTCAGTTGTCAGCTGGATTGTGGTCTTACCTGAAAACCTGGTACTGCTCTCTCCTCCTCAGCAGCTGTACTATGAAGAAGGGCAGGAGGGTAGCTGCCGGGTAGCTCTGCGGTCAGGGTGATTTCATGTGGAGAGTACTATTCCAGTAGTAGGTTATCACTCATGGGCAAGCAGTGGAGAGGCAGCAAGAACAGGATAGTAGGGACAGAACAAGACCCCCACCACATACTGCCTTGTTTAACACGGGCAGTGAAGGGGATGTTCCCAGAAACATCCAGGGTGCCAGAAAATGTGTATCTTCTCATAAACCCTGGGTCCGGGGAAGTTAATGCAGACACACCTCCCCCCAGGTAACACAAGATGCCTAGTTGGGGATTATGGAGGCCATGTTCAGGCTGCTGGACATCTCAGCCCTGGGAACTGAATTGGCTCTATAGTCATCAGAGTGGCAGCACTCTCTCTCAAACTAATTCTATCTTTTGCTGTTCCCACAGCCAATATTCTGACGGTCCTGAGAACATGTGCATAATTTCCCTACCCAACTTGAAAGGTGGTGTTGGTCCATTTTCGGTTCAATTATTGACTGCTAAGCAGGCCCAGCAGCCATAGATTTCTAGGAGGAATGTGACTTCCATGTTTCACAAACTATTTTGATTTCTTTTTTAGACATTGCTTTAAAATATCATTCTTTTTTTATAAATCTTTTTTTAAGGATTTATTTATTATATATGAGTACACTTTAGCTGTCTTCAGACACACCAGAAGAGGGCATCGGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGTCCCCCGGAAGAGCAGTCAATGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTAAAATATCATTCTTAATTTATATGCCAATGTGAAATGAAATGTCAGCTGGAGTTCCTGGCAGGTTGCAGTCAGTGATCTCTAAGATAGAAAAATGGTTAGATTGTTCACCTTCACCAAAACTTTAGCTCAACTGAGACCCTCATGACGTTTGTGATGTTTTTGCCTACCTCACAG
Seq C2 exon
CCCCCTGAAGACCCCACTAAGAGTGCTGGACCTAGCCAACTGTGCCCTTAATCATGAAGACATATCCTTCTTAGCAAACTGTAACCACACTGCCCACTTGGAGGTGCTGGACCTTAGTGGACACAACCTGGTACACTTGTACCCTTCTACCTTCTTCAGGCTGCTGAGCCAGGCTGCCCAAACGCTGAAAGTTCTCACCTTAGAGGACTGCAACATCACGGACAGCCATGTTAACATGATGATTCTGGGCCTCAGCCCTTGCAGCCAGCTCCAGCAGTTCAAGTTCCTTGGGAACCCACTATCAGGCAGTGCTCTCCGGCGCCTTTTTGCTGCACTCTGCGAACTCCCTAGGCTGCGCCACATTGAGTTCCCAGTGCCAAAGGACTGCTACCCTGAGGGTGCTATCTACCCCCAGGATGAGCTGTCAGTGTCCAAATTCGACCAACAAAAATATGACATGATTGCAGAGGATCTGCAAGCAGTACTGCTTCGAGCTAACCGGGAGGATATTCAGGCCTCCACCCCACTTTTTGGAAGTTTTGATCCAGACATTCATGAAACCAGCAATGAACTTGGTACTTTCTTGCTGCAAGCTTTCAAAACTGCTTTGGAAAACTTTTCCAGAGCGCTAGAACAAATGGAGTAGGTCCTGGAATCATGGTACACGAGGCTATGCATTTCTAGTACCGAGGTCAGTCCTGGACGAGAAGATCAGGCTCAACCATTTGTCACCAGCAGCAACACTGCCACAAGATTTCCTTAGAGAAAACTGCAGGCATGCTCATTACATGCTGTAAGAGGAAGCCCAGCTATATGAATGAGACCTGAGGTGCTCCTGTGTGTTAGTAGCACAAGATCCTCAAAGAGAGGGGAAGCCACCTCAAGCTAAGATAAGGTGGAGGAGAATGTGAGCACCAGGCAGGGTGTAGTGGGAGCAGGGTCAACCACCCAGCTCTCATGCTATGAGAGGGAGAAATGAGAAAGTTTAGCTATGCTCTATGTGCTGTACATTTTATCAAATGACATCTGCCTACACATTTGGCTTCGTTTCCAACCGAAACAGACTTGCACCATTTTTTTGGCTACTGAGGACACTAGTCACTGCAATATGCCCAATGCTTCTTGGCATATTCTGGTCCCGTCTTCTGCTCAGAGTTCAAACCCTAAGACAGGCATTTCCAACCTGCACAGTATATGCAGCCACATGTGACAGAGGACAGCTATGAATGTGGCCCATTGCAAAGCTGTAAACTTACTGAAGACATTGAGATGAGCTTTTGAAATCTGTTGTGACTCAATTATACAGTTTTGAAGCATGAACTCTGTAGACGATAACAGATCTATAAAGCACCCAAATCAGTGCTTCTCAGAATAGCTGAGGCCTGGCCCTTTGCAACTCCTTTGAGAAATAAAGTACTACACAAAAAGACTTGGTGAGACTTCATTTCCAGTATTTGCTTTACCAAAGTACTACTTTAATTAAATGCTAATAAAATAGGAGTGTGGCTTAACTTACGCACAGTTTAATAATCTAAATTTTAAAACTTAGAGTATGAAAATAGTTCTTTCGTAACAGAAGTAAAAACCTTAGCTCCATAACCACCCGTGTGCCAACCTAGGCACTTGACTCCATTCGTAGTTCTGCATGTGACCCACCTGCTCAGGTACCTCCCCATTTCAGGACCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028357:ENSRNOT00000034704:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=31.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGATGCTCCTCCAACCTG
R:
AGAACTTTCAGCGTTTGGGCA
Band lengths:
345-1942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]