RnoEX0050821 @ rn6
Exon Skipping
Gene
ENSRNOG00000028357 | Lrrc14b
Description
leucine rich repeat containing 14B [Source:RGD Symbol;Acc:1564978]
Coordinates
chr1:31531143-31535314:+
Coord C1 exon
chr1:31531143-31531487
Coord A exon
chr1:31531878-31532029
Coord C2 exon
chr1:31533627-31535314
Length
152 bp
Sequences
Splice sites
3' ss Seq
CACTCACCTTGCCCACCAAGGCG
3' ss Score
3.18
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
ATGAGGTCGCTTCGTTTCATTTCGGCTAAAGCTTTAGCGTCCCACCCCCAGCTGGTCCAGGAGAACCTGGATAGCATAGCCTACAACCTCTACCCACTTCTGTTCAAGACCAGTTACCTGCTAGAACAGGCGGACATAACCCGTGCTCTGCTGAGTCACTGGCCGCTAGAGGAGTTCCGGCTGGCTGTGCTACTAGGGCCAAACATTGACCACCCGGAAGACCTGCGTGATCGTGCCTGCAAGGCCTGCCTGGAGGCCTGTATGCAGGGCATAGCTGACCATGTGCTGAGAAGTGGGAGCAACCGCCTTCGGGTAGCGGATTTCACCGGCATCCAGGATGTACAG
Seq A exon
GCGTTCGATGCTCCTCCAACCTGTGCTCCAGATCCAGAGGGTGAGGATCTCCTCCTTACCTCTATTGCCTGGGAGCTCAGCCAGATGAACCAGCTCACTGAGCTAAGTGTAGCTTTCTCTACACTGACTGGGAAGATCCAAACATTGCTTAG
Seq C2 exon
CCCCCTGAAGACCCCACTAAGAGTGCTGGACCTAGCCAACTGTGCCCTTAATCATGAAGACATATCCTTCTTAGCAAACTGTAACCACACTGCCCACTTGGAGGTGCTGGACCTTAGTGGACACAACCTGGTACACTTGTACCCTTCTACCTTCTTCAGGCTGCTGAGCCAGGCTGCCCAAACGCTGAAAGTTCTCACCTTAGAGGACTGCAACATCACGGACAGCCATGTTAACATGATGATTCTGGGCCTCAGCCCTTGCAGCCAGCTCCAGCAGTTCAAGTTCCTTGGGAACCCACTATCAGGCAGTGCTCTCCGGCGCCTTTTTGCTGCACTCTGCGAACTCCCTAGGCTGCGCCACATTGAGTTCCCAGTGCCAAAGGACTGCTACCCTGAGGGTGCTATCTACCCCCAGGATGAGCTGTCAGTGTCCAAATTCGACCAACAAAAATATGACATGATTGCAGAGGATCTGCAAGCAGTACTGCTTCGAGCTAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028357_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138551=LRR_8=WD(100=31.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACCCGTGCTCTGCTGAG
R:
TTGGCTAGGTCCAGCACTCTT
Band lengths:
250-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]