MmuEX1022835 @ mm10
Exon Skipping
Gene
ENSMUSG00000039087 | Rreb1
Description
ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]
Coordinates
chr13:37778400-37888972:+
Coord C1 exon
chr13:37778400-37778557
Coord A exon
chr13:37826294-37826344
Coord C2 exon
chr13:37888871-37888972
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCCTCGTTCTCTCCCCGAAGCCC
3' ss Score
8.5
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GAGTTGCGGGGCAGGCTCAGAAGTTGCAGCTGCGAAGGCTGCTTCCCTCCCCCTTCCTGGACTCGGCGGCTTGGATCGCACACCCAGTGGTCATCGCCCGCTACCTGCCCTCGCCAGAACCAGGCTGCATCCCCTCCCCGCGCCCACGAGAAACCCAG
Seq A exon
CCCACCGGTCCTCACCGCATCATGCCTGGGAGCCCAGCACCCTGCCGGGCC
Seq C2 exon
GTTGTTGCAATCCTGTGCTCCAGAAGTGGTGGCTTTGAGGTGTGACCCTGCCCACATTTGGGCCCAGTCCTCACCAGCTCCTCGGCAGAACGAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039087_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCTCCCCCTTCCTGG
R:
CTGGAGCACAGGATTGCAACA
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types